miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 34733 0.67 0.415609
Target:  5'- cGUGCAgcacccccUGGCgGGCAUCgGCGaCCaguugCUGGCg -3'
miRNA:   3'- -CGCGU--------AUUG-CCGUAGgCGC-GG-----GACCG- -5'
23102 3' -57.5 NC_005178.1 + 34643 0.74 0.160268
Target:  5'- aGCGCuAUAAgGGCGUguucgaccgCCGCGCCCguagccugaacccUGGCc -3'
miRNA:   3'- -CGCG-UAUUgCCGUA---------GGCGCGGG-------------ACCG- -5'
23102 3' -57.5 NC_005178.1 + 34624 0.71 0.254097
Target:  5'- -aGCAUAGCGaGCAgCUGCGgcucgaCCUGGCc -3'
miRNA:   3'- cgCGUAUUGC-CGUaGGCGCg-----GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 34565 0.78 0.072297
Target:  5'- uGCGCAcgcuCGGCAggccaUCCGCGCUCgGGCg -3'
miRNA:   3'- -CGCGUauu-GCCGU-----AGGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 33906 0.68 0.361056
Target:  5'- cGCGCcUGGCGGCGaugcUCgGCGgCCggugccGGCu -3'
miRNA:   3'- -CGCGuAUUGCCGU----AGgCGCgGGa-----CCG- -5'
23102 3' -57.5 NC_005178.1 + 33775 0.68 0.396867
Target:  5'- -aGaCAUcAGCGGCAUggugCCGC-CCUUGGCg -3'
miRNA:   3'- cgC-GUA-UUGCCGUA----GGCGcGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 33015 0.66 0.454665
Target:  5'- -----gGGCGGCGUCCG-GCUCgaugGGCa -3'
miRNA:   3'- cgcguaUUGCCGUAGGCgCGGGa---CCG- -5'
23102 3' -57.5 NC_005178.1 + 32754 0.66 0.464737
Target:  5'- gGCGCG--GCGGCgAUUgGCGaUCCaGGCg -3'
miRNA:   3'- -CGCGUauUGCCG-UAGgCGC-GGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 31675 0.67 0.414659
Target:  5'- cGCGCuggacgAugGGCggCCgagggccgguguaGCGgCCUGGCu -3'
miRNA:   3'- -CGCGua----UugCCGuaGG-------------CGCgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 31044 0.67 0.434883
Target:  5'- cCGCAUGcgcACGGUggCgGCGgugaCCUGGCc -3'
miRNA:   3'- cGCGUAU---UGCCGuaGgCGCg---GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 30829 0.74 0.14377
Target:  5'- gGCGCAUGGCGGCA-CC---UCCUGGCu -3'
miRNA:   3'- -CGCGUAUUGCCGUaGGcgcGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 30544 0.71 0.254097
Target:  5'- uGUGCAacAUGGCcuUCCuCGCgCCUGGCg -3'
miRNA:   3'- -CGCGUauUGCCGu-AGGcGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 30188 0.67 0.434883
Target:  5'- gGCGuCAUcuGCGGCgaugGUCaCGCGCCCcucugucGGCu -3'
miRNA:   3'- -CGC-GUAu-UGCCG----UAG-GCGCGGGa------CCG- -5'
23102 3' -57.5 NC_005178.1 + 28532 0.66 0.506126
Target:  5'- gGCGCuacAUGACugGGCGggggccguccgCCGCGCCaccgggGGCg -3'
miRNA:   3'- -CGCG---UAUUG--CCGUa----------GGCGCGGga----CCG- -5'
23102 3' -57.5 NC_005178.1 + 28167 0.75 0.124892
Target:  5'- gGCGCcu--CGGCuguAUCCgccucggccgGCGCCCUGGCg -3'
miRNA:   3'- -CGCGuauuGCCG---UAGG----------CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 28008 0.69 0.310138
Target:  5'- cGCGCuucgcucguUGGCGUucCCGCGCCaggcggcgCUGGCg -3'
miRNA:   3'- -CGCGuauu-----GCCGUA--GGCGCGG--------GACCG- -5'
23102 3' -57.5 NC_005178.1 + 27327 0.68 0.369795
Target:  5'- uCGCG-GACGGUAUCCGgcagcaUGUCCUGGa -3'
miRNA:   3'- cGCGUaUUGCCGUAGGC------GCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 27210 0.78 0.072297
Target:  5'- aGCGCAgccCGGCGcgcuucgccccUCCGCGCCC-GGCc -3'
miRNA:   3'- -CGCGUauuGCCGU-----------AGGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 26904 0.66 0.485221
Target:  5'- gGCGCGgagacgcCGGCcggggcgUUGCGCCCcGGCu -3'
miRNA:   3'- -CGCGUauu----GCCGua-----GGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 26312 0.7 0.296417
Target:  5'- cGC-CAUGGCGGCGUCaCuCGCCagGGCg -3'
miRNA:   3'- -CGcGUAUUGCCGUAG-GcGCGGgaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.