miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 34565 0.78 0.072297
Target:  5'- uGCGCAcgcuCGGCAggccaUCCGCGCUCgGGCg -3'
miRNA:   3'- -CGCGUauu-GCCGU-----AGGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 1831 0.68 0.387702
Target:  5'- gGCGCAcguccuggAGCGGacCAUCCGCcauGUCCUcGGCc -3'
miRNA:   3'- -CGCGUa-------UUGCC--GUAGGCG---CGGGA-CCG- -5'
23102 3' -57.5 NC_005178.1 + 33775 0.68 0.396867
Target:  5'- -aGaCAUcAGCGGCAUggugCCGC-CCUUGGCg -3'
miRNA:   3'- cgC-GUA-UUGCCGUA----GGCGcGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 11208 0.66 0.510354
Target:  5'- cCGCc--ACGGCcucauacugagugCCGUucGCCCUGGCg -3'
miRNA:   3'- cGCGuauUGCCGua-----------GGCG--CGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 22883 0.76 0.111472
Target:  5'- cGCGCcguccuccAUGGCGGCGg-CGCGCuCCUGGUa -3'
miRNA:   3'- -CGCG--------UAUUGCCGUagGCGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 30829 0.74 0.14377
Target:  5'- gGCGCAUGGCGGCA-CC---UCCUGGCu -3'
miRNA:   3'- -CGCGUAUUGCCGUaGGcgcGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 21110 0.72 0.222733
Target:  5'- -aGCGUGGCGGCGagcuggcgggcaUCCGCaGCCaguaggucaUGGCg -3'
miRNA:   3'- cgCGUAUUGCCGU------------AGGCG-CGGg--------ACCG- -5'
23102 3' -57.5 NC_005178.1 + 20140 0.71 0.234865
Target:  5'- uCGUAUGcgGCGGCAUa-GCGCCC-GGCc -3'
miRNA:   3'- cGCGUAU--UGCCGUAggCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 14083 0.7 0.26079
Target:  5'- aGCaGCGggcCGGCuucgcgCCggGCGCCCUGGCc -3'
miRNA:   3'- -CG-CGUauuGCCGua----GG--CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 27327 0.68 0.369795
Target:  5'- uCGCG-GACGGUAUCCGgcagcaUGUCCUGGa -3'
miRNA:   3'- cGCGUaUUGCCGUAGGC------GCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 28008 0.69 0.310138
Target:  5'- cGCGCuucgcucguUGGCGUucCCGCGCCaggcggcgCUGGCg -3'
miRNA:   3'- -CGCGuauu-----GCCGUA--GGCGCGG--------GACCG- -5'
23102 3' -57.5 NC_005178.1 + 11460 0.71 0.254097
Target:  5'- aCGCu--GCGGCAgcgUCCGC-CCCUcgGGCg -3'
miRNA:   3'- cGCGuauUGCCGU---AGGCGcGGGA--CCG- -5'
23102 3' -57.5 NC_005178.1 + 27210 0.78 0.072297
Target:  5'- aGCGCAgccCGGCGcgcuucgccccUCCGCGCCC-GGCc -3'
miRNA:   3'- -CGCGUauuGCCGU-----------AGGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 16460 0.69 0.311692
Target:  5'- gGCGCAcacggacgaccuUGGCGcCAUCCGCGCCauuGCg -3'
miRNA:   3'- -CGCGU------------AUUGCcGUAGGCGCGGgacCG- -5'
23102 3' -57.5 NC_005178.1 + 2310 0.77 0.099411
Target:  5'- cGCGCGcGAgGGUGaCCGUGCCgCUGGCg -3'
miRNA:   3'- -CGCGUaUUgCCGUaGGCGCGG-GACCG- -5'
23102 3' -57.5 NC_005178.1 + 34624 0.71 0.254097
Target:  5'- -aGCAUAGCGaGCAgCUGCGgcucgaCCUGGCc -3'
miRNA:   3'- cgCGUAUUGC-CGUaGGCGCg-----GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 20471 0.69 0.311692
Target:  5'- uGCGCuccagguacucaAUGGCGGCcUCCG-GCCgcaUGGCg -3'
miRNA:   3'- -CGCG------------UAUUGCCGuAGGCgCGGg--ACCG- -5'
23102 3' -57.5 NC_005178.1 + 23311 0.68 0.387702
Target:  5'- gGUGCcgAcuugccagacGCGGCccuugCCgGCGCCCUGGg -3'
miRNA:   3'- -CGCGuaU----------UGCCGua---GG-CGCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 17084 0.77 0.10056
Target:  5'- gGCG-GUGGCGGCggcgaucugcucgacGUCCGCGUCCUGGg -3'
miRNA:   3'- -CGCgUAUUGCCG---------------UAGGCGCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 17636 0.73 0.184409
Target:  5'- gGCgGCAcUGGCGGCAucgaUCCGCcaGCCC-GGCa -3'
miRNA:   3'- -CG-CGU-AUUGCCGU----AGGCG--CGGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.