Results 1 - 20 of 100 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 33908 | 0.66 | 0.600562 |
Target: 5'- cGCCUGGcGGCgAUGCucggcGGCCGGuGCCGg -3' miRNA: 3'- cCGGGUC-CUG-UACGuu---UUGGUC-CGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 17805 | 0.66 | 0.600562 |
Target: 5'- cGCCCugauGGACcagGUGCuguACaacaAGGCCGa -3' miRNA: 3'- cCGGGu---CCUG---UACGuuuUGg---UCCGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 19679 | 0.66 | 0.600562 |
Target: 5'- gGGUCCAGGAgCAcGUccuGGACCucGCCGa -3' miRNA: 3'- -CCGGGUCCU-GUaCGu--UUUGGucCGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 31756 | 0.66 | 0.593788 |
Target: 5'- uGGCCCgAGGuaauGCcgGCGAcgaccuacagggggcGGCCAGuGCUGg -3' miRNA: 3'- -CCGGG-UCC----UGuaCGUU---------------UUGGUC-CGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 3359 | 0.66 | 0.58928 |
Target: 5'- aGGUCCAGcACccgAUGCAcgGCCGgcccuuccGGCCGg -3' miRNA: 3'- -CCGGGUCcUG---UACGUuuUGGU--------CCGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 27882 | 0.66 | 0.58928 |
Target: 5'- cGCCCAGGGCAacUGgGucAACgGGGCg- -3' miRNA: 3'- cCGGGUCCUGU--ACgUu-UUGgUCCGgc -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 27457 | 0.66 | 0.58928 |
Target: 5'- cGCUCGaccuGGaACAUGC---GCCGGGCCa -3' miRNA: 3'- cCGGGU----CC-UGUACGuuuUGGUCCGGc -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 4082 | 0.66 | 0.58928 |
Target: 5'- uGGUCCAGGucgGCAcggugUGCAGGugCuGaGCCGu -3' miRNA: 3'- -CCGGGUCC---UGU-----ACGUUUugGuC-CGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 29771 | 0.66 | 0.588153 |
Target: 5'- uGGCCuauuucaCAGGaACA-GCGAacAACCcGGCCGa -3' miRNA: 3'- -CCGG-------GUCC-UGUaCGUU--UUGGuCCGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 5289 | 0.66 | 0.588153 |
Target: 5'- cGUUCAGGGCcgGCGcgagcugGAACU-GGCCGa -3' miRNA: 3'- cCGGGUCCUGuaCGU-------UUUGGuCCGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 21009 | 0.66 | 0.578036 |
Target: 5'- cGCCguGGGCGgcaGCAccGCCAccGGCCu -3' miRNA: 3'- cCGGguCCUGUa--CGUuuUGGU--CCGGc -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 11985 | 0.66 | 0.578036 |
Target: 5'- aGCCCuGGuGCggGCugguACCGGGCUGc -3' miRNA: 3'- cCGGGuCC-UGuaCGuuu-UGGUCCGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 11888 | 0.66 | 0.578036 |
Target: 5'- cGCCCAGGcCGUGCGGGA--GGuGCUGu -3' miRNA: 3'- cCGGGUCCuGUACGUUUUggUC-CGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 2718 | 0.66 | 0.578036 |
Target: 5'- aGCCC-GGugGUgGCGGcGCCAcGCCGg -3' miRNA: 3'- cCGGGuCCugUA-CGUUuUGGUcCGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 9345 | 0.66 | 0.576914 |
Target: 5'- cGCUCAGGAgCGUGCc--GCCAGcagucgccagggcGCCGg -3' miRNA: 3'- cCGGGUCCU-GUACGuuuUGGUC-------------CGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 30780 | 0.66 | 0.575792 |
Target: 5'- --aCCAGGACAUccgccugGCAGcggucgcggccucGACCuGGGCCGg -3' miRNA: 3'- ccgGGUCCUGUA-------CGUU-------------UUGG-UCCGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 2168 | 0.66 | 0.566839 |
Target: 5'- uGGCCCucgcuGGuguuCGUcaGCA--GCCGGGCCu -3' miRNA: 3'- -CCGGGu----CCu---GUA--CGUuuUGGUCCGGc -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 17518 | 0.66 | 0.566839 |
Target: 5'- aGUCCAGGaaacgGCcgGCAGcgGGCgCGGGCUGg -3' miRNA: 3'- cCGGGUCC-----UGuaCGUU--UUG-GUCCGGC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 15529 | 0.66 | 0.566839 |
Target: 5'- cGGCUU-GGugGUGUccagcaGGAACCAGGCgGu -3' miRNA: 3'- -CCGGGuCCugUACG------UUUUGGUCCGgC- -5' |
|||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 16825 | 0.66 | 0.555699 |
Target: 5'- uGGgUCAGGGCGgcgauggGCuuGGCCuGGCCc -3' miRNA: 3'- -CCgGGUCCUGUa------CGuuUUGGuCCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home