Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 16816 | 1.12 | 0.000333 |
Target: 5'- cGGCCCAGGACAUGCAAAACCAGGCCGa -3' miRNA: 3'- -CCGGGUCCUGUACGUUUUGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 10215 | 0.78 | 0.094943 |
Target: 5'- aGGUCCAGGACAUGCugccggauACCGuccgcgacauGGCCGg -3' miRNA: 3'- -CCGGGUCCUGUACGuuu-----UGGU----------CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 17873 | 0.77 | 0.126956 |
Target: 5'- aGGUCCAGGACGUGCuccuGGACCcGGUa- -3' miRNA: 3'- -CCGGGUCCUGUACGu---UUUGGuCCGgc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 20394 | 0.76 | 0.146483 |
Target: 5'- cGGCCCuGGACGcccagGCGAccAACCuGGCCa -3' miRNA: 3'- -CCGGGuCCUGUa----CGUU--UUGGuCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 10091 | 0.76 | 0.150704 |
Target: 5'- uGGCCCGGcGCAUGUu---CCAGGUCGa -3' miRNA: 3'- -CCGGGUCcUGUACGuuuuGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 26470 | 0.76 | 0.14237 |
Target: 5'- cGGCCgAGGugGaUGCGGGAUCAGGCa- -3' miRNA: 3'- -CCGGgUCCugU-ACGUUUUGGUCCGgc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 34723 | 0.76 | 0.14237 |
Target: 5'- aGGUCUAGGGCGUGCAGcACCcccuGGCgGg -3' miRNA: 3'- -CCGGGUCCUGUACGUUuUGGu---CCGgC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 5949 | 0.75 | 0.168713 |
Target: 5'- uGGCCU-GGACGggGCGGAccagguCCAGGCCGg -3' miRNA: 3'- -CCGGGuCCUGUa-CGUUUu-----GGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 26401 | 0.75 | 0.164038 |
Target: 5'- aGCCCAGGGCG-GCG--GCCAGGgCGc -3' miRNA: 3'- cCGGGUCCUGUaCGUuuUGGUCCgGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 22674 | 0.74 | 0.197153 |
Target: 5'- aGCCCAGGGCGaccucgcCCAGGCCGa -3' miRNA: 3'- cCGGGUCCUGUacguuuuGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 1885 | 0.73 | 0.228451 |
Target: 5'- uGGCCCuGG---UGCAGGcugaggaguaucGCCAGGCCGa -3' miRNA: 3'- -CCGGGuCCuguACGUUU------------UGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 6401 | 0.73 | 0.220552 |
Target: 5'- cGCCCAGGAgccuccagacgaucCGUGCAuuGACCacgggcGGGCCGu -3' miRNA: 3'- cCGGGUCCU--------------GUACGUu-UUGG------UCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 16930 | 0.73 | 0.216396 |
Target: 5'- cGGCCCuccuGGAUA-GCGcuguuGAUCAGGCCGu -3' miRNA: 3'- -CCGGGu---CCUGUaCGUu----UUGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 6752 | 0.73 | 0.24107 |
Target: 5'- cGGCCCAGGuCGaggccGCGAccgcuGCCAGGCgGa -3' miRNA: 3'- -CCGGGUCCuGUa----CGUUu----UGGUCCGgC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 19878 | 0.72 | 0.267343 |
Target: 5'- uGGCCCAuGGAUggGCGcccuaugGAuguGCCGGGCUGg -3' miRNA: 3'- -CCGGGU-CCUGuaCGU-------UU---UGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 11305 | 0.72 | 0.247595 |
Target: 5'- cGCCCAGGugGUG----GCCGGGCUc -3' miRNA: 3'- cCGGGUCCugUACguuuUGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 17398 | 0.72 | 0.261082 |
Target: 5'- cGUCCGGGGCGUaGCugAAGACgGGGCUGa -3' miRNA: 3'- cCGGGUCCUGUA-CG--UUUUGgUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 23355 | 0.72 | 0.261082 |
Target: 5'- cGGCaCCGGGGCGUcGC---ACCAGGgCGg -3' miRNA: 3'- -CCG-GGUCCUGUA-CGuuuUGGUCCgGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 17639 | 0.72 | 0.268046 |
Target: 5'- aGUCCAGcGCcgGCAAGACC-GGCCa -3' miRNA: 3'- cCGGGUCcUGuaCGUUUUGGuCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 37137 | 0.71 | 0.305128 |
Target: 5'- aGGUCCAGGAgcUAcGCc--GCCAGGCCu -3' miRNA: 3'- -CCGGGUCCU--GUaCGuuuUGGUCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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