miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23122 5' -56 NC_005178.1 + 25329 0.66 0.553154
Target:  5'- cGaCUCGAuCCAAGcCGCugGCGAccaUGCc -3'
miRNA:   3'- uC-GAGUUcGGUUC-GCGugCGCU---ACGc -5'
23122 5' -56 NC_005178.1 + 16351 0.66 0.542039
Target:  5'- cGCUCAccAGCCAgaccAGCGaguCGgGcgGCGg -3'
miRNA:   3'- uCGAGU--UCGGU----UCGCgu-GCgCuaCGC- -5'
23122 5' -56 NC_005178.1 + 20753 0.66 0.542039
Target:  5'- cAGCagAGcGCCGGGCGUACcuCGGUGCc -3'
miRNA:   3'- -UCGagUU-CGGUUCGCGUGc-GCUACGc -5'
23122 5' -56 NC_005178.1 + 27965 0.66 0.542039
Target:  5'- aAGCggCGAccGCCcAGCGCAgCGCGgcGCa -3'
miRNA:   3'- -UCGa-GUU--CGGuUCGCGU-GCGCuaCGc -5'
23122 5' -56 NC_005178.1 + 22452 0.66 0.540931
Target:  5'- cAGCcCGccuuGGCCGAGCGCuucaccaGCuCGGUGCGc -3'
miRNA:   3'- -UCGaGU----UCGGUUCGCG-------UGcGCUACGC- -5'
23122 5' -56 NC_005178.1 + 3540 0.66 0.530999
Target:  5'- cGGCUCGGGCUAcGUcaaccacaugauGCGCGaCGAgGCGg -3'
miRNA:   3'- -UCGAGUUCGGUuCG------------CGUGC-GCUaCGC- -5'
23122 5' -56 NC_005178.1 + 26766 0.66 0.530999
Target:  5'- gGGCUC-GGCCAggauggcggcGGCGUAguCGCGGgggcUGCGu -3'
miRNA:   3'- -UCGAGuUCGGU----------UCGCGU--GCGCU----ACGC- -5'
23122 5' -56 NC_005178.1 + 8761 0.66 0.520042
Target:  5'- gGGCgacuuGGCC-AGCGUGCGgGcgGCGg -3'
miRNA:   3'- -UCGagu--UCGGuUCGCGUGCgCuaCGC- -5'
23122 5' -56 NC_005178.1 + 25720 0.66 0.520042
Target:  5'- aAGCUCGacAGCCuccAGGCGCGCcUGaAUGCu -3'
miRNA:   3'- -UCGAGU--UCGG---UUCGCGUGcGC-UACGc -5'
23122 5' -56 NC_005178.1 + 10320 0.66 0.520042
Target:  5'- uAGCcgaGGGCCGGGCGCGgagggGCGAaGCGc -3'
miRNA:   3'- -UCGag-UUCGGUUCGCGUg----CGCUaCGC- -5'
23122 5' -56 NC_005178.1 + 22271 0.66 0.520042
Target:  5'- aGGCUgGcccGCCAGGCgGCGgGCGAUGa- -3'
miRNA:   3'- -UCGAgUu--CGGUUCG-CGUgCGCUACgc -5'
23122 5' -56 NC_005178.1 + 19459 0.66 0.518951
Target:  5'- gGGCU-GGGCCAGGCGC-UGCGGcagguucgccagcUGCu -3'
miRNA:   3'- -UCGAgUUCGGUUCGCGuGCGCU-------------ACGc -5'
23122 5' -56 NC_005178.1 + 3019 0.66 0.509175
Target:  5'- cGCUuccuggacCAGGCCGAGCGUgGCGCccuGGUGCc -3'
miRNA:   3'- uCGA--------GUUCGGUUCGCG-UGCG---CUACGc -5'
23122 5' -56 NC_005178.1 + 25801 0.66 0.498404
Target:  5'- uGGCUCGGGCCAcGGCcguggcauauGCGCG-GGUGUc -3'
miRNA:   3'- -UCGAGUUCGGU-UCG----------CGUGCgCUACGc -5'
23122 5' -56 NC_005178.1 + 10434 0.66 0.498404
Target:  5'- uGGCUCGcuGCCAcaaGGCGCugGUacGGUGgCGc -3'
miRNA:   3'- -UCGAGUu-CGGU---UCGCGugCG--CUAC-GC- -5'
23122 5' -56 NC_005178.1 + 24411 0.66 0.498404
Target:  5'- cGCUCAcggaugaagcuGGCCAGGCGCugGa---GCa -3'
miRNA:   3'- uCGAGU-----------UCGGUUCGCGugCgcuaCGc -5'
23122 5' -56 NC_005178.1 + 25916 0.66 0.498404
Target:  5'- cAGCUUu-GCCAGG-GCGCG-GAUGCc -3'
miRNA:   3'- -UCGAGuuCGGUUCgCGUGCgCUACGc -5'
23122 5' -56 NC_005178.1 + 25331 0.67 0.487737
Target:  5'- cGCUU-GGCCAGGCGCugGaaaaGAgccGCGc -3'
miRNA:   3'- uCGAGuUCGGUUCGCGugCg---CUa--CGC- -5'
23122 5' -56 NC_005178.1 + 26195 0.67 0.477178
Target:  5'- cGCUgCGGGCguGGCGCugGCucugGCGu -3'
miRNA:   3'- uCGA-GUUCGguUCGCGugCGcua-CGC- -5'
23122 5' -56 NC_005178.1 + 5360 0.67 0.477178
Target:  5'- cGCUCGgugucggcguccAGCUcGGUGCugGUGAggaUGCGg -3'
miRNA:   3'- uCGAGU------------UCGGuUCGCGugCGCU---ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.