Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23130 | 3' | -57.1 | NC_005178.1 | + | 27765 | 0.66 | 0.498098 |
Target: 5'- --gACGGCGCguAGGcucaucGCUUGGUCcucccuggauGGCu -3' miRNA: 3'- uuaUGCCGCGguUCC------UGAACCGG----------CCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 16676 | 0.66 | 0.487516 |
Target: 5'- --gGCGGUcCUggGcGAUcaGGCCGGCg -3' miRNA: 3'- uuaUGCCGcGGuuC-CUGaaCCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 30799 | 0.66 | 0.487516 |
Target: 5'- --aGCGGUcgcgGCCuc-GACcugGGCCGGCg -3' miRNA: 3'- uuaUGCCG----CGGuucCUGaa-CCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 13203 | 0.66 | 0.487516 |
Target: 5'- --gGCGGCguacucauagGCCGcuuugaacggcuGGGuCggGGCCGGCg -3' miRNA: 3'- uuaUGCCG----------CGGU------------UCCuGaaCCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 4523 | 0.66 | 0.487516 |
Target: 5'- ---uCGGUGCCGcccAGGAUguaaagaucgGGuCCGGCg -3' miRNA: 3'- uuauGCCGCGGU---UCCUGaa--------CC-GGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 25829 | 0.66 | 0.477042 |
Target: 5'- ---uCGGCacgucugacGCCAuGGcCgUGGCCGGCa -3' miRNA: 3'- uuauGCCG---------CGGUuCCuGaACCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 28192 | 0.66 | 0.477042 |
Target: 5'- ---cCGGCGCCcuGGcGACUgcUGG-CGGCa -3' miRNA: 3'- uuauGCCGCGGu-UC-CUGA--ACCgGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 29666 | 0.66 | 0.46668 |
Target: 5'- ----gGGCGCCGAGGACgugauugUGGaggaUGGg -3' miRNA: 3'- uuaugCCGCGGUUCCUGa------ACCg---GCCg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 13852 | 0.66 | 0.46668 |
Target: 5'- --cGCccuGCGCCAccGGCUU-GCCGGCa -3' miRNA: 3'- uuaUGc--CGCGGUucCUGAAcCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 5522 | 0.66 | 0.46668 |
Target: 5'- ---gUGGCGaCCAGGGucaggucgucgGCgugGGUCGGCa -3' miRNA: 3'- uuauGCCGC-GGUUCC-----------UGaa-CCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 25168 | 0.66 | 0.46668 |
Target: 5'- --cACGGUugaGCCAAGGcCgccgguagUGGCCugGGCg -3' miRNA: 3'- uuaUGCCG---CGGUUCCuGa-------ACCGG--CCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 2758 | 0.66 | 0.456436 |
Target: 5'- --gGCGGUccGCCAGGaGACgcaGCUGGCc -3' miRNA: 3'- uuaUGCCG--CGGUUC-CUGaacCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 14948 | 0.66 | 0.446314 |
Target: 5'- --gACaGGCGUCcuGGACgUGGUCGGg -3' miRNA: 3'- uuaUG-CCGCGGuuCCUGaACCGGCCg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 28529 | 0.66 | 0.446314 |
Target: 5'- --gGCGGCGCUAcaugacuGGGCgggGGCCGu- -3' miRNA: 3'- uuaUGCCGCGGUu------CCUGaa-CCGGCcg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 3337 | 0.66 | 0.445308 |
Target: 5'- --gACGGCcacacguucgacGCCGAGGuccagcacccgauGCacGGCCGGCc -3' miRNA: 3'- uuaUGCCG------------CGGUUCC-------------UGaaCCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 15860 | 0.67 | 0.436318 |
Target: 5'- aAAUACuGGcCGUCGaaacAGGGCUUGGUgaaGGCg -3' miRNA: 3'- -UUAUG-CC-GCGGU----UCCUGAACCGg--CCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 5352 | 0.67 | 0.436318 |
Target: 5'- cGGUGCGGCcccgagcCCGAGGACUucgaaaUGaGCCucGGCa -3' miRNA: 3'- -UUAUGCCGc------GGUUCCUGA------AC-CGG--CCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 8948 | 0.67 | 0.426452 |
Target: 5'- --aGCGGCGCCcaugcuuGGGCgUGGUagggaUGGCg -3' miRNA: 3'- uuaUGCCGCGGuu-----CCUGaACCG-----GCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 17066 | 0.67 | 0.426452 |
Target: 5'- --gGCGGCGaCCuucagcuGGGCggUGGCggCGGCg -3' miRNA: 3'- uuaUGCCGC-GGuu-----CCUGa-ACCG--GCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 13804 | 0.67 | 0.426452 |
Target: 5'- --gACGGCGCagcAGGaACUcGGCuuCGGCg -3' miRNA: 3'- uuaUGCCGCGgu-UCC-UGAaCCG--GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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