miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23130 3' -57.1 NC_005178.1 + 27765 0.66 0.498098
Target:  5'- --gACGGCGCguAGGcucaucGCUUGGUCcucccuggauGGCu -3'
miRNA:   3'- uuaUGCCGCGguUCC------UGAACCGG----------CCG- -5'
23130 3' -57.1 NC_005178.1 + 30799 0.66 0.487516
Target:  5'- --aGCGGUcgcgGCCuc-GACcugGGCCGGCg -3'
miRNA:   3'- uuaUGCCG----CGGuucCUGaa-CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 16676 0.66 0.487516
Target:  5'- --gGCGGUcCUggGcGAUcaGGCCGGCg -3'
miRNA:   3'- uuaUGCCGcGGuuC-CUGaaCCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 4523 0.66 0.487516
Target:  5'- ---uCGGUGCCGcccAGGAUguaaagaucgGGuCCGGCg -3'
miRNA:   3'- uuauGCCGCGGU---UCCUGaa--------CC-GGCCG- -5'
23130 3' -57.1 NC_005178.1 + 13203 0.66 0.487516
Target:  5'- --gGCGGCguacucauagGCCGcuuugaacggcuGGGuCggGGCCGGCg -3'
miRNA:   3'- uuaUGCCG----------CGGU------------UCCuGaaCCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 25829 0.66 0.477042
Target:  5'- ---uCGGCacgucugacGCCAuGGcCgUGGCCGGCa -3'
miRNA:   3'- uuauGCCG---------CGGUuCCuGaACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 28192 0.66 0.477042
Target:  5'- ---cCGGCGCCcuGGcGACUgcUGG-CGGCa -3'
miRNA:   3'- uuauGCCGCGGu-UC-CUGA--ACCgGCCG- -5'
23130 3' -57.1 NC_005178.1 + 25168 0.66 0.46668
Target:  5'- --cACGGUugaGCCAAGGcCgccgguagUGGCCugGGCg -3'
miRNA:   3'- uuaUGCCG---CGGUUCCuGa-------ACCGG--CCG- -5'
23130 3' -57.1 NC_005178.1 + 13852 0.66 0.46668
Target:  5'- --cGCccuGCGCCAccGGCUU-GCCGGCa -3'
miRNA:   3'- uuaUGc--CGCGGUucCUGAAcCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 5522 0.66 0.46668
Target:  5'- ---gUGGCGaCCAGGGucaggucgucgGCgugGGUCGGCa -3'
miRNA:   3'- uuauGCCGC-GGUUCC-----------UGaa-CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 29666 0.66 0.46668
Target:  5'- ----gGGCGCCGAGGACgugauugUGGaggaUGGg -3'
miRNA:   3'- uuaugCCGCGGUUCCUGa------ACCg---GCCg -5'
23130 3' -57.1 NC_005178.1 + 2758 0.66 0.456436
Target:  5'- --gGCGGUccGCCAGGaGACgcaGCUGGCc -3'
miRNA:   3'- uuaUGCCG--CGGUUC-CUGaacCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 28529 0.66 0.446314
Target:  5'- --gGCGGCGCUAcaugacuGGGCgggGGCCGu- -3'
miRNA:   3'- uuaUGCCGCGGUu------CCUGaa-CCGGCcg -5'
23130 3' -57.1 NC_005178.1 + 14948 0.66 0.446314
Target:  5'- --gACaGGCGUCcuGGACgUGGUCGGg -3'
miRNA:   3'- uuaUG-CCGCGGuuCCUGaACCGGCCg -5'
23130 3' -57.1 NC_005178.1 + 3337 0.66 0.445308
Target:  5'- --gACGGCcacacguucgacGCCGAGGuccagcacccgauGCacGGCCGGCc -3'
miRNA:   3'- uuaUGCCG------------CGGUUCC-------------UGaaCCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 15860 0.67 0.436318
Target:  5'- aAAUACuGGcCGUCGaaacAGGGCUUGGUgaaGGCg -3'
miRNA:   3'- -UUAUG-CC-GCGGU----UCCUGAACCGg--CCG- -5'
23130 3' -57.1 NC_005178.1 + 5352 0.67 0.436318
Target:  5'- cGGUGCGGCcccgagcCCGAGGACUucgaaaUGaGCCucGGCa -3'
miRNA:   3'- -UUAUGCCGc------GGUUCCUGA------AC-CGG--CCG- -5'
23130 3' -57.1 NC_005178.1 + 17066 0.67 0.426452
Target:  5'- --gGCGGCGaCCuucagcuGGGCggUGGCggCGGCg -3'
miRNA:   3'- uuaUGCCGC-GGuu-----CCUGa-ACCG--GCCG- -5'
23130 3' -57.1 NC_005178.1 + 8948 0.67 0.426452
Target:  5'- --aGCGGCGCCcaugcuuGGGCgUGGUagggaUGGCg -3'
miRNA:   3'- uuaUGCCGCGGuu-----CCUGaACCG-----GCCG- -5'
23130 3' -57.1 NC_005178.1 + 13804 0.67 0.426452
Target:  5'- --gACGGCGCagcAGGaACUcGGCuuCGGCg -3'
miRNA:   3'- uuaUGCCGCGgu-UCC-UGAaCCG--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.