Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23130 | 5' | -63.1 | NC_005178.1 | + | 2577 | 0.66 | 0.243725 |
Target: 5'- uGGCCGGGCU---UCCAggGCUGCCg -3' miRNA: 3'- cCCGGUCCGGuucGGGUagCGGCGGg -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 18897 | 0.66 | 0.272158 |
Target: 5'- -cGCCGggauagucaccuuacGGCCucGCCCAgccUGaCCGCCCa -3' miRNA: 3'- ccCGGU---------------CCGGuuCGGGUa--GC-GGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 1669 | 0.66 | 0.256331 |
Target: 5'- gGGGCgccguugaucagUAGGCCAguauucGGcCCCAUCGUCagGCUCa -3' miRNA: 3'- -CCCG------------GUCCGGU------UC-GGGUAGCGG--CGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 10725 | 0.66 | 0.241879 |
Target: 5'- cGGGCCGaagacagccccgcuGGCCAcAGCgCGUCccggcuggaagGCCuGCCCc -3' miRNA: 3'- -CCCGGU--------------CCGGU-UCGgGUAG-----------CGG-CGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 13406 | 0.66 | 0.237617 |
Target: 5'- cGGCgGGGaguaCCucGCCCGUCacggagcccGCCGCCUu -3' miRNA: 3'- cCCGgUCC----GGuuCGGGUAG---------CGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 37507 | 0.66 | 0.237617 |
Target: 5'- -uGCUauagGGGCUcuAGCCUAUC-CCGCCCu -3' miRNA: 3'- ccCGG----UCCGGu-UCGGGUAGcGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 24603 | 0.66 | 0.249962 |
Target: 5'- uGGGucaCCAGGCCGgccAGCaCCuggcgCGCCacguccuccaGCCCa -3' miRNA: 3'- -CCC---GGUCCGGU---UCG-GGua---GCGG----------CGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 36178 | 0.66 | 0.237617 |
Target: 5'- cGGGCCAuGuUCAAGCCC-UCGCuuCGUCUu -3' miRNA: 3'- -CCCGGUcC-GGUUCGGGuAGCG--GCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 35561 | 0.66 | 0.237617 |
Target: 5'- uGGCCAGGCCGaccAGCUgAUCGauaccaCGgUCg -3' miRNA: 3'- cCCGGUCCGGU---UCGGgUAGCg-----GCgGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 34984 | 0.66 | 0.269467 |
Target: 5'- uGGCCGcgcuGGCCGaggcgccgaccAGCCUGUCGCagaGCUa -3' miRNA: 3'- cCCGGU----CCGGU-----------UCGGGUAGCGg--CGGg -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 25412 | 0.66 | 0.269467 |
Target: 5'- cGGCCcGGaUCAAGgCgaugGUCGCCGCCUc -3' miRNA: 3'- cCCGGuCC-GGUUCgGg---UAGCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 18460 | 0.66 | 0.269467 |
Target: 5'- gGGGCCGGGau-GGCCUcaGUUGa-GCCCc -3' miRNA: 3'- -CCCGGUCCgguUCGGG--UAGCggCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 25879 | 0.66 | 0.262832 |
Target: 5'- -cGCCAGGCCAugcGGCa-GUUGCCGgCg -3' miRNA: 3'- ccCGGUCCGGU---UCGggUAGCGGCgGg -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 36040 | 0.66 | 0.249962 |
Target: 5'- gGGGCCGGGgCGAa-CCAgaacCGCUugGCCCg -3' miRNA: 3'- -CCCGGUCCgGUUcgGGUa---GCGG--CGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 9987 | 0.66 | 0.249962 |
Target: 5'- aGGCCGGGCgAcGCCaaaagUGCCGCa- -3' miRNA: 3'- cCCGGUCCGgUuCGGgua--GCGGCGgg -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 17819 | 0.66 | 0.247451 |
Target: 5'- aGGuGCUguacaacaAGGCCGAGCgCAcccugggagcgccUGCCGCCCu -3' miRNA: 3'- -CC-CGG--------UCCGGUUCGgGUa------------GCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 7272 | 0.66 | 0.262832 |
Target: 5'- uGGcCCAGaGCCugcGCaCCuucaacgaCGCCGCCCg -3' miRNA: 3'- cCC-GGUC-CGGuu-CG-GGua------GCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 11144 | 0.66 | 0.269467 |
Target: 5'- -aGCgCGGGC---GCCCuggcCGCCGCCCu -3' miRNA: 3'- ccCG-GUCCGguuCGGGua--GCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 20482 | 0.66 | 0.262832 |
Target: 5'- -cGCCAccGCCcAGCUgaagGUCGCCGCCCc -3' miRNA: 3'- ccCGGUc-CGGuUCGGg---UAGCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 6879 | 0.66 | 0.269467 |
Target: 5'- cGGCCugGGGCgAGcguccGCCCGUCuUCGUCCa -3' miRNA: 3'- cCCGG--UCCGgUU-----CGGGUAGcGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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