miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23130 5' -63.1 NC_005178.1 + 1405 0.67 0.202039
Target:  5'- uGGCCagcAGGCguGGCCUcguUCGCCaccugcacccgccaGCCCa -3'
miRNA:   3'- cCCGG---UCCGguUCGGGu--AGCGG--------------CGGG- -5'
23130 5' -63.1 NC_005178.1 + 1669 0.66 0.256331
Target:  5'- gGGGCgccguugaucagUAGGCCAguauucGGcCCCAUCGUCagGCUCa -3'
miRNA:   3'- -CCCG------------GUCCGGU------UC-GGGUAGCGG--CGGG- -5'
23130 5' -63.1 NC_005178.1 + 2004 0.68 0.16937
Target:  5'- cGGCCuGGCCAAugCgGUCGCgcuuCGCCCa -3'
miRNA:   3'- cCCGGuCCGGUUcgGgUAGCG----GCGGG- -5'
23130 5' -63.1 NC_005178.1 + 2093 0.68 0.18337
Target:  5'- uGGCCGGGCgGguacGGCUUAccUUGgCGCCCg -3'
miRNA:   3'- cCCGGUCCGgU----UCGGGU--AGCgGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 2148 0.67 0.225786
Target:  5'- cGGCCAGcGCCGGGgCCAgu-UgGCCCu -3'
miRNA:   3'- cCCGGUC-CGGUUCgGGUagcGgCGGG- -5'
23130 5' -63.1 NC_005178.1 + 2577 0.66 0.243725
Target:  5'- uGGCCGGGCU---UCCAggGCUGCCg -3'
miRNA:   3'- cCCGGUCCGGuucGGGUagCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 2725 0.66 0.262832
Target:  5'- uGGuGgCGGcGCCAcGCCgGUUGUCGCCg -3'
miRNA:   3'- -CC-CgGUC-CGGUuCGGgUAGCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 2920 0.77 0.040958
Target:  5'- cGGCCAGGUCGAGCCgCAgcugcUCGCUaugcucaagaugGCCCg -3'
miRNA:   3'- cCCGGUCCGGUUCGG-GU-----AGCGG------------CGGG- -5'
23130 5' -63.1 NC_005178.1 + 3026 0.75 0.05401
Target:  5'- uGGaCCAGGCCGAGCguggcgcccuggugCCGaaggucCGCCGCCCg -3'
miRNA:   3'- cCC-GGUCCGGUUCG--------------GGUa-----GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 3120 0.76 0.043369
Target:  5'- aGGGCCGGagaaGCgCAGcGCCCG-CGCUGCCCa -3'
miRNA:   3'- -CCCGGUC----CG-GUU-CGGGUaGCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 3450 0.71 0.115978
Target:  5'- cGGCCuGGCCGagucGGCCCugguggugGUCGauGCCCu -3'
miRNA:   3'- cCCGGuCCGGU----UCGGG--------UAGCggCGGG- -5'
23130 5' -63.1 NC_005178.1 + 3636 0.71 0.101042
Target:  5'- cGGCacCAGGCC--GCCgagCAUCGCCGCCa -3'
miRNA:   3'- cCCG--GUCCGGuuCGG---GUAGCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 3760 0.69 0.152194
Target:  5'- -cGCCGGGCCAucgccaagggcGGCaCCAU-GCCGCUg -3'
miRNA:   3'- ccCGGUCCGGU-----------UCG-GGUAgCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 4461 0.68 0.193264
Target:  5'- aGGUCu-GCgCGAGCCCGUCGCaaCCCg -3'
miRNA:   3'- cCCGGucCG-GUUCGGGUAGCGgcGGG- -5'
23130 5' -63.1 NC_005178.1 + 4502 0.72 0.085512
Target:  5'- uGGCCAccuGCCGgaauGCCCucggUGCCGCCCa -3'
miRNA:   3'- cCCGGUc--CGGUu---CGGGua--GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 4513 0.74 0.058809
Target:  5'- uGGCCGagcggcaacgcuccGGCCu-GCCCAUcgagccggaCGCCGCCCa -3'
miRNA:   3'- cCCGGU--------------CCGGuuCGGGUA---------GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 4659 0.67 0.231638
Target:  5'- uGGCCAauGGCauGGCCgaCAUCGCCaacaucGCCCu -3'
miRNA:   3'- cCCGGU--CCGguUCGG--GUAGCGG------CGGG- -5'
23130 5' -63.1 NC_005178.1 + 5857 0.8 0.02107
Target:  5'- -aGCCAGGCCGcuacaccGGCCC-UCgGCCGCCCa -3'
miRNA:   3'- ccCGGUCCGGU-------UCGGGuAG-CGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 6135 0.69 0.164919
Target:  5'- aGGCCAgaucGGCagcGCCCAaacgCGCgCGCCCc -3'
miRNA:   3'- cCCGGU----CCGguuCGGGUa---GCG-GCGGG- -5'
23130 5' -63.1 NC_005178.1 + 6243 0.67 0.198384
Target:  5'- cGGcGCCAGGCgCAuAGCCCggCGCUggGUCa -3'
miRNA:   3'- -CC-CGGUCCG-GU-UCGGGuaGCGG--CGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.