Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23130 | 5' | -63.1 | NC_005178.1 | + | 20718 | 1.12 | 0.000062 |
Target: 5'- uGGGCCAGGCCAAGCCCAUCGCCGCCCu -3' miRNA: 3'- -CCCGGUCCGGUUCGGGUAGCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 5857 | 0.8 | 0.02107 |
Target: 5'- -aGCCAGGCCGcuacaccGGCCC-UCgGCCGCCCa -3' miRNA: 3'- ccCGGUCCGGU-------UCGGGuAG-CGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 14472 | 0.77 | 0.036525 |
Target: 5'- aGGGCCAGGCUGAGCUUccCGgaggaaauaCCGCCCa -3' miRNA: 3'- -CCCGGUCCGGUUCGGGuaGC---------GGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 2920 | 0.77 | 0.040958 |
Target: 5'- cGGCCAGGUCGAGCCgCAgcugcUCGCUaugcucaagaugGCCCg -3' miRNA: 3'- cCCGGUCCGGUUCGG-GU-----AGCGG------------CGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 3120 | 0.76 | 0.043369 |
Target: 5'- aGGGCCGGagaaGCgCAGcGCCCG-CGCUGCCCa -3' miRNA: 3'- -CCCGGUC----CG-GUU-CGGGUaGCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 16522 | 0.75 | 0.050017 |
Target: 5'- cGGCCcagguAGGUCAGGCCgGUggcggugcUGCCGCCCa -3' miRNA: 3'- cCCGG-----UCCGGUUCGGgUA--------GCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 3026 | 0.75 | 0.05401 |
Target: 5'- uGGaCCAGGCCGAGCguggcgcccuggugCCGaaggucCGCCGCCCg -3' miRNA: 3'- cCC-GGUCCGGUUCG--------------GGUa-----GCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 25514 | 0.75 | 0.056041 |
Target: 5'- aGGGCCAgGGCCAAGCCgAggCGCCagGUCa -3' miRNA: 3'- -CCCGGU-CCGGUUCGGgUa-GCGG--CGGg -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 19283 | 0.75 | 0.057653 |
Target: 5'- cGGcCCAGGgCGAGCCCGUCGUCGaugcuuUCCa -3' miRNA: 3'- cCC-GGUCCgGUUCGGGUAGCGGC------GGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 4513 | 0.74 | 0.058809 |
Target: 5'- uGGCCGagcggcaacgcuccGGCCu-GCCCAUcgagccggaCGCCGCCCa -3' miRNA: 3'- cCCGGU--------------CCGGuuCGGGUA---------GCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 12109 | 0.74 | 0.064565 |
Target: 5'- cGGGCCuGGCCGaugGGCg---CGCCGCCUg -3' miRNA: 3'- -CCCGGuCCGGU---UCGgguaGCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 31309 | 0.74 | 0.066414 |
Target: 5'- -cGCCGGGCUAugcGCCUggCGCCGCgCCg -3' miRNA: 3'- ccCGGUCCGGUu--CGGGuaGCGGCG-GG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 21499 | 0.74 | 0.068314 |
Target: 5'- cGGCCAGGCCAgcacgcggaacAGCCCGcuacgCGCCacguauCCCg -3' miRNA: 3'- cCCGGUCCGGU-----------UCGGGUa----GCGGc-----GGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 14088 | 0.73 | 0.072273 |
Target: 5'- cGGGCCGGcuucgcGCCGGgcGCCCuggcCGUCGCCCu -3' miRNA: 3'- -CCCGGUC------CGGUU--CGGGua--GCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 17399 | 0.73 | 0.080861 |
Target: 5'- cGGCCuacauGGCCGGGCgCUAU-GCCGCCg -3' miRNA: 3'- cCCGGu----CCGGUUCG-GGUAgCGGCGGg -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 17328 | 0.73 | 0.083156 |
Target: 5'- cGGCgGGGCCGAggucGCCCAgcUCGgCaGCCCg -3' miRNA: 3'- cCCGgUCCGGUU----CGGGU--AGCgG-CGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 25434 | 0.72 | 0.085512 |
Target: 5'- cGGCgCAGGCgGcgcGCCCAUCGgCCagGCCCg -3' miRNA: 3'- cCCG-GUCCGgUu--CGGGUAGC-GG--CGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 4502 | 0.72 | 0.085512 |
Target: 5'- uGGCCAccuGCCGgaauGCCCucggUGCCGCCCa -3' miRNA: 3'- cCCGGUc--CGGUu---CGGGua--GCGGCGGG- -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 20443 | 0.72 | 0.086473 |
Target: 5'- cGGCCuGGCCcaggacgcggacgucGAGCagAUCGCCGCCg -3' miRNA: 3'- cCCGGuCCGG---------------UUCGggUAGCGGCGGg -5' |
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23130 | 5' | -63.1 | NC_005178.1 | + | 16887 | 0.72 | 0.087933 |
Target: 5'- -aGCgAGGCCGAGCUgcUCGgCGCCCu -3' miRNA: 3'- ccCGgUCCGGUUCGGguAGCgGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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