miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23130 5' -63.1 NC_005178.1 + 10792 0.7 0.125905
Target:  5'- -cGCCAuccuGGCCGAGCCCA--GCCGCg- -3'
miRNA:   3'- ccCGGU----CCGGUUCGGGUagCGGCGgg -5'
23130 5' -63.1 NC_005178.1 + 16834 0.72 0.09297
Target:  5'- --aCCAGGCCGauAGCCUGgucgCGCCGCUCc -3'
miRNA:   3'- cccGGUCCGGU--UCGGGUa---GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 22679 0.72 0.095591
Target:  5'- aGGGCgaccucgccCAGGCCGAGCUgGaucgccgggUCGCUGCCg -3'
miRNA:   3'- -CCCG---------GUCCGGUUCGGgU---------AGCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 10046 0.72 0.095591
Target:  5'- -cGCUccuGGCCAGcGCCCAUCGCC-CCUg -3'
miRNA:   3'- ccCGGu--CCGGUU-CGGGUAGCGGcGGG- -5'
23130 5' -63.1 NC_005178.1 + 20020 0.71 0.103876
Target:  5'- cGGCCAGcCCGcGCCCGcUGCCGgCCg -3'
miRNA:   3'- cCCGGUCcGGUuCGGGUaGCGGCgGG- -5'
23130 5' -63.1 NC_005178.1 + 17053 0.71 0.106786
Target:  5'- cGGGCCAucuucGCCAugcGGCCgGagGCCGCCa -3'
miRNA:   3'- -CCCGGUc----CGGU---UCGGgUagCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 37137 0.71 0.109771
Target:  5'- aGGuCCAGgagcuacgccGCCAGGCCUAUCGCaccgaGUCCg -3'
miRNA:   3'- cCC-GGUC----------CGGUUCGGGUAGCGg----CGGG- -5'
23130 5' -63.1 NC_005178.1 + 23450 0.71 0.112835
Target:  5'- aGGGCgAcGGCCAGggcGCCCGgcgcgaaGCCgGCCCg -3'
miRNA:   3'- -CCCGgU-CCGGUU---CGGGUag-----CGG-CGGG- -5'
23130 5' -63.1 NC_005178.1 + 3450 0.71 0.115978
Target:  5'- cGGCCuGGCCGagucGGCCCugguggugGUCGauGCCCu -3'
miRNA:   3'- cCCGGuCCGGU----UCGGG--------UAGCggCGGG- -5'
23130 5' -63.1 NC_005178.1 + 16887 0.72 0.087933
Target:  5'- -aGCgAGGCCGAGCUgcUCGgCGCCCu -3'
miRNA:   3'- ccCGgUCCGGUUCGGguAGCgGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 20443 0.72 0.086473
Target:  5'- cGGCCuGGCCcaggacgcggacgucGAGCagAUCGCCGCCg -3'
miRNA:   3'- cCCGGuCCGG---------------UUCGggUAGCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 17328 0.73 0.083156
Target:  5'- cGGCgGGGCCGAggucGCCCAgcUCGgCaGCCCg -3'
miRNA:   3'- cCCGgUCCGGUU----CGGGU--AGCgG-CGGG- -5'
23130 5' -63.1 NC_005178.1 + 5857 0.8 0.02107
Target:  5'- -aGCCAGGCCGcuacaccGGCCC-UCgGCCGCCCa -3'
miRNA:   3'- ccCGGUCCGGU-------UCGGGuAG-CGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 2920 0.77 0.040958
Target:  5'- cGGCCAGGUCGAGCCgCAgcugcUCGCUaugcucaagaugGCCCg -3'
miRNA:   3'- cCCGGUCCGGUUCGG-GU-----AGCGG------------CGGG- -5'
23130 5' -63.1 NC_005178.1 + 3120 0.76 0.043369
Target:  5'- aGGGCCGGagaaGCgCAGcGCCCG-CGCUGCCCa -3'
miRNA:   3'- -CCCGGUC----CG-GUU-CGGGUaGCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 3026 0.75 0.05401
Target:  5'- uGGaCCAGGCCGAGCguggcgcccuggugCCGaaggucCGCCGCCCg -3'
miRNA:   3'- cCC-GGUCCGGUUCG--------------GGUa-----GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 4513 0.74 0.058809
Target:  5'- uGGCCGagcggcaacgcuccGGCCu-GCCCAUcgagccggaCGCCGCCCa -3'
miRNA:   3'- cCCGGU--------------CCGGuuCGGGUA---------GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 12109 0.74 0.064565
Target:  5'- cGGGCCuGGCCGaugGGCg---CGCCGCCUg -3'
miRNA:   3'- -CCCGGuCCGGU---UCGgguaGCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 31309 0.74 0.066414
Target:  5'- -cGCCGGGCUAugcGCCUggCGCCGCgCCg -3'
miRNA:   3'- ccCGGUCCGGUu--CGGGuaGCGGCG-GG- -5'
23130 5' -63.1 NC_005178.1 + 17399 0.73 0.080861
Target:  5'- cGGCCuacauGGCCGGGCgCUAU-GCCGCCg -3'
miRNA:   3'- cCCGGu----CCGGUUCG-GGUAgCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.