Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 2766 | 0.66 | 0.679817 |
Target: 5'- --gAUCcUGGACGACgguCAGggugaucuuGCCGUCGCc -3' miRNA: 3'- augUAGcACCUGCUG---GUC---------UGGCAGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 5310 | 0.66 | 0.679817 |
Target: 5'- cUACAUCGgucGGcuCGACCAGGCggcccagggcggCGUCGa -3' miRNA: 3'- -AUGUAGCa--CCu-GCUGGUCUG------------GCAGCg -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 34197 | 0.66 | 0.657356 |
Target: 5'- gUGCAUCGggugcUGGAccucggcguCGAacgUguGGCCGUCGCa -3' miRNA: 3'- -AUGUAGC-----ACCU---------GCU---GguCUGGCAGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 4903 | 0.66 | 0.657356 |
Target: 5'- cAUGUCGUaGACGACCAGgucgacggcACCGcUCGg -3' miRNA: 3'- aUGUAGCAcCUGCUGGUC---------UGGC-AGCg -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 26641 | 0.66 | 0.646082 |
Target: 5'- gGCAaUGgacgagcGGGCGAgCCAGAUCGUCGa -3' miRNA: 3'- aUGUaGCa------CCUGCU-GGUCUGGCAGCg -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 24901 | 0.66 | 0.634795 |
Target: 5'- gGCAagGcGGAUGACUGGGuCCGuUCGCu -3' miRNA: 3'- aUGUagCaCCUGCUGGUCU-GGC-AGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 32719 | 0.66 | 0.634795 |
Target: 5'- gGCGaUGUGGACuGGCC-GACCGUggauagcugcCGCa -3' miRNA: 3'- aUGUaGCACCUG-CUGGuCUGGCA----------GCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 34985 | 0.66 | 0.634795 |
Target: 5'- gGCcgCGcUGGccgaggcgcCGACCAGcCUGUCGCa -3' miRNA: 3'- aUGuaGC-ACCu--------GCUGGUCuGGCAGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 3705 | 0.67 | 0.623506 |
Target: 5'- cUACAUCGgcgccgacaUGGACcGCCAGGCCaa-GCu -3' miRNA: 3'- -AUGUAGC---------ACCUGcUGGUCUGGcagCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 7657 | 0.67 | 0.612225 |
Target: 5'- gGCGUUGa--ACGACCAGugGCCGUCGg -3' miRNA: 3'- aUGUAGCaccUGCUGGUC--UGGCAGCg -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 19403 | 0.67 | 0.612225 |
Target: 5'- -cCAUCcUGGACGACaUAGACCagcgacUCGCu -3' miRNA: 3'- auGUAGcACCUGCUG-GUCUGGc-----AGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 14952 | 0.67 | 0.600962 |
Target: 5'- gGCGUCcUGGACGuggUCGGGCCGccaucCGCa -3' miRNA: 3'- aUGUAGcACCUGCu--GGUCUGGCa----GCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 15969 | 0.67 | 0.589727 |
Target: 5'- aGCAUCGcGGGCGAgguacuCCAG-CCGUUcgGCu -3' miRNA: 3'- aUGUAGCaCCUGCU------GGUCuGGCAG--CG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 9122 | 0.67 | 0.589727 |
Target: 5'- -uCAUUGuUGGAUaGCCAGGCCGguaugcugUCGCu -3' miRNA: 3'- auGUAGC-ACCUGcUGGUCUGGC--------AGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 3964 | 0.67 | 0.589727 |
Target: 5'- cGCGUCGccGGucGCGACCAG-CaCGUCGg -3' miRNA: 3'- aUGUAGCa-CC--UGCUGGUCuG-GCAGCg -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 28748 | 0.68 | 0.556282 |
Target: 5'- uUACAUCGUcuGGcugaacaagaACcGCCAGGCCGUCaaGCa -3' miRNA: 3'- -AUGUAGCA--CC----------UGcUGGUCUGGCAG--CG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 5744 | 0.68 | 0.54525 |
Target: 5'- cGCAUCgGUGG-CGGCCucgggcacGACCGugUCGCc -3' miRNA: 3'- aUGUAG-CACCuGCUGGu-------CUGGC--AGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 35192 | 0.68 | 0.54525 |
Target: 5'- cGCAgUCGUGGACGAUgAGAuaGUC-Cg -3' miRNA: 3'- aUGU-AGCACCUGCUGgUCUggCAGcG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 23328 | 0.68 | 0.53429 |
Target: 5'- cUAUGUCGUcuaccuGGGCGAcgagaucggcaCCGGGgCGUCGCa -3' miRNA: 3'- -AUGUAGCA------CCUGCU-----------GGUCUgGCAGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 20336 | 0.69 | 0.47042 |
Target: 5'- cACGUUccaGGuuauCGACCAGGgCGUCGCg -3' miRNA: 3'- aUGUAGca-CCu---GCUGGUCUgGCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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