miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23133 5' -54.6 NC_005178.1 + 2766 0.66 0.679817
Target:  5'- --gAUCcUGGACGACgguCAGggugaucuuGCCGUCGCc -3'
miRNA:   3'- augUAGcACCUGCUG---GUC---------UGGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 5310 0.66 0.679817
Target:  5'- cUACAUCGgucGGcuCGACCAGGCggcccagggcggCGUCGa -3'
miRNA:   3'- -AUGUAGCa--CCu-GCUGGUCUG------------GCAGCg -5'
23133 5' -54.6 NC_005178.1 + 34197 0.66 0.657356
Target:  5'- gUGCAUCGggugcUGGAccucggcguCGAacgUguGGCCGUCGCa -3'
miRNA:   3'- -AUGUAGC-----ACCU---------GCU---GguCUGGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 4903 0.66 0.657356
Target:  5'- cAUGUCGUaGACGACCAGgucgacggcACCGcUCGg -3'
miRNA:   3'- aUGUAGCAcCUGCUGGUC---------UGGC-AGCg -5'
23133 5' -54.6 NC_005178.1 + 26641 0.66 0.646082
Target:  5'- gGCAaUGgacgagcGGGCGAgCCAGAUCGUCGa -3'
miRNA:   3'- aUGUaGCa------CCUGCU-GGUCUGGCAGCg -5'
23133 5' -54.6 NC_005178.1 + 24901 0.66 0.634795
Target:  5'- gGCAagGcGGAUGACUGGGuCCGuUCGCu -3'
miRNA:   3'- aUGUagCaCCUGCUGGUCU-GGC-AGCG- -5'
23133 5' -54.6 NC_005178.1 + 32719 0.66 0.634795
Target:  5'- gGCGaUGUGGACuGGCC-GACCGUggauagcugcCGCa -3'
miRNA:   3'- aUGUaGCACCUG-CUGGuCUGGCA----------GCG- -5'
23133 5' -54.6 NC_005178.1 + 34985 0.66 0.634795
Target:  5'- gGCcgCGcUGGccgaggcgcCGACCAGcCUGUCGCa -3'
miRNA:   3'- aUGuaGC-ACCu--------GCUGGUCuGGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 3705 0.67 0.623506
Target:  5'- cUACAUCGgcgccgacaUGGACcGCCAGGCCaa-GCu -3'
miRNA:   3'- -AUGUAGC---------ACCUGcUGGUCUGGcagCG- -5'
23133 5' -54.6 NC_005178.1 + 7657 0.67 0.612225
Target:  5'- gGCGUUGa--ACGACCAGugGCCGUCGg -3'
miRNA:   3'- aUGUAGCaccUGCUGGUC--UGGCAGCg -5'
23133 5' -54.6 NC_005178.1 + 19403 0.67 0.612225
Target:  5'- -cCAUCcUGGACGACaUAGACCagcgacUCGCu -3'
miRNA:   3'- auGUAGcACCUGCUG-GUCUGGc-----AGCG- -5'
23133 5' -54.6 NC_005178.1 + 14952 0.67 0.600962
Target:  5'- gGCGUCcUGGACGuggUCGGGCCGccaucCGCa -3'
miRNA:   3'- aUGUAGcACCUGCu--GGUCUGGCa----GCG- -5'
23133 5' -54.6 NC_005178.1 + 15969 0.67 0.589727
Target:  5'- aGCAUCGcGGGCGAgguacuCCAG-CCGUUcgGCu -3'
miRNA:   3'- aUGUAGCaCCUGCU------GGUCuGGCAG--CG- -5'
23133 5' -54.6 NC_005178.1 + 9122 0.67 0.589727
Target:  5'- -uCAUUGuUGGAUaGCCAGGCCGguaugcugUCGCu -3'
miRNA:   3'- auGUAGC-ACCUGcUGGUCUGGC--------AGCG- -5'
23133 5' -54.6 NC_005178.1 + 3964 0.67 0.589727
Target:  5'- cGCGUCGccGGucGCGACCAG-CaCGUCGg -3'
miRNA:   3'- aUGUAGCa-CC--UGCUGGUCuG-GCAGCg -5'
23133 5' -54.6 NC_005178.1 + 28748 0.68 0.556282
Target:  5'- uUACAUCGUcuGGcugaacaagaACcGCCAGGCCGUCaaGCa -3'
miRNA:   3'- -AUGUAGCA--CC----------UGcUGGUCUGGCAG--CG- -5'
23133 5' -54.6 NC_005178.1 + 5744 0.68 0.54525
Target:  5'- cGCAUCgGUGG-CGGCCucgggcacGACCGugUCGCc -3'
miRNA:   3'- aUGUAG-CACCuGCUGGu-------CUGGC--AGCG- -5'
23133 5' -54.6 NC_005178.1 + 35192 0.68 0.54525
Target:  5'- cGCAgUCGUGGACGAUgAGAuaGUC-Cg -3'
miRNA:   3'- aUGU-AGCACCUGCUGgUCUggCAGcG- -5'
23133 5' -54.6 NC_005178.1 + 23328 0.68 0.53429
Target:  5'- cUAUGUCGUcuaccuGGGCGAcgagaucggcaCCGGGgCGUCGCa -3'
miRNA:   3'- -AUGUAGCA------CCUGCU-----------GGUCUgGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 20336 0.69 0.47042
Target:  5'- cACGUUccaGGuuauCGACCAGGgCGUCGCg -3'
miRNA:   3'- aUGUAGca-CCu---GCUGGUCUgGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.