miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23137 3' -53.7 NC_005178.1 + 34514 0.66 0.705903
Target:  5'- aCAACaacGCgGUCGCUGCGUcgcaGGGGCGg -3'
miRNA:   3'- aGUUGac-UGgUAGCGGCGCG----UCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 9578 0.66 0.694693
Target:  5'- ---cCUGcGCCG-CGCUGCGCuGGGCGg -3'
miRNA:   3'- aguuGAC-UGGUaGCGGCGCGuCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 7349 0.66 0.694693
Target:  5'- cCGACagaggggcgcgUGACCAUCGCCGC--AGAugACGc -3'
miRNA:   3'- aGUUG-----------ACUGGUAGCGGCGcgUCU--UGC- -5'
23137 3' -53.7 NC_005178.1 + 3848 0.66 0.683419
Target:  5'- aCGACcGGCCGcacagcagcUUGCCGCGCAucguugacccGAACa -3'
miRNA:   3'- aGUUGaCUGGU---------AGCGGCGCGU----------CUUGc -5'
23137 3' -53.7 NC_005178.1 + 27469 0.67 0.660723
Target:  5'- aUCAGCcugGACCAgaagaUCGCCGagGCcaGGAACa -3'
miRNA:   3'- -AGUUGa--CUGGU-----AGCGGCg-CG--UCUUGc -5'
23137 3' -53.7 NC_005178.1 + 27515 0.67 0.660723
Target:  5'- --cGCUGGCCAggagCGCggugauuuUGCGCAGcACGg -3'
miRNA:   3'- aguUGACUGGUa---GCG--------GCGCGUCuUGC- -5'
23137 3' -53.7 NC_005178.1 + 34573 0.67 0.660723
Target:  5'- cUCGGCaGGCCAUCcgcgcucgggcgGCCGCGaGGAucGCGg -3'
miRNA:   3'- -AGUUGaCUGGUAG------------CGGCGCgUCU--UGC- -5'
23137 3' -53.7 NC_005178.1 + 31968 0.67 0.660723
Target:  5'- -aAAC-GACCucuUCGCCGCGCuuGAAUc -3'
miRNA:   3'- agUUGaCUGGu--AGCGGCGCGu-CUUGc -5'
23137 3' -53.7 NC_005178.1 + 25052 0.67 0.649326
Target:  5'- uUCGcCUG-CC-UCGUCGCaGCAGGACa -3'
miRNA:   3'- -AGUuGACuGGuAGCGGCG-CGUCUUGc -5'
23137 3' -53.7 NC_005178.1 + 2692 0.67 0.637912
Target:  5'- uUCGGCccUGccgaaggaaACCcgCGCCGCGCugcuGAACGc -3'
miRNA:   3'- -AGUUG--AC---------UGGuaGCGGCGCGu---CUUGC- -5'
23137 3' -53.7 NC_005178.1 + 14619 0.67 0.63677
Target:  5'- cUCAACUcgGACgAcgaaggggUCGCCGCGCuggaguucuaccaGGAGCGc -3'
miRNA:   3'- -AGUUGA--CUGgU--------AGCGGCGCG-------------UCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 1781 0.67 0.63106
Target:  5'- gUCGuGCUGcugccaagaguugauGCCGUCGCggacacUGCGCAGGACa -3'
miRNA:   3'- -AGU-UGAC---------------UGGUAGCG------GCGCGUCUUGc -5'
23137 3' -53.7 NC_005178.1 + 5318 0.67 0.626493
Target:  5'- gUCGGCUcGACCAg-GCgGCcCAGGGCGg -3'
miRNA:   3'- -AGUUGA-CUGGUagCGgCGcGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 26303 0.67 0.626493
Target:  5'- gCAACUGuccGCCAUgGCgGCGUcacucgccAGGGCGa -3'
miRNA:   3'- aGUUGAC---UGGUAgCGgCGCG--------UCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 17610 0.67 0.626493
Target:  5'- --cGCUGugCGUCGCCGUgGUcuGACGg -3'
miRNA:   3'- aguUGACugGUAGCGGCG-CGucUUGC- -5'
23137 3' -53.7 NC_005178.1 + 34335 0.67 0.615079
Target:  5'- gCGGCUGA-CGUUGCCgaccuuGCGCAGgAACGc -3'
miRNA:   3'- aGUUGACUgGUAGCGG------CGCGUC-UUGC- -5'
23137 3' -53.7 NC_005178.1 + 22885 0.67 0.615079
Target:  5'- -----aGGCUAUCGCCGaUGCGGAcGCGg -3'
miRNA:   3'- aguugaCUGGUAGCGGC-GCGUCU-UGC- -5'
23137 3' -53.7 NC_005178.1 + 14111 0.67 0.615079
Target:  5'- ---cCUGGCCGUCGCCcugggcgucgGCGUAGuACa -3'
miRNA:   3'- aguuGACUGGUAGCGG----------CGCGUCuUGc -5'
23137 3' -53.7 NC_005178.1 + 27896 0.67 0.615079
Target:  5'- cUCGGCgaaGCCAcCgGCCGCGCAGAuCa -3'
miRNA:   3'- -AGUUGac-UGGUaG-CGGCGCGUCUuGc -5'
23137 3' -53.7 NC_005178.1 + 20730 0.67 0.60368
Target:  5'- -----aGcCCAUCGCCGCccugacccaacaGCAGAGCGc -3'
miRNA:   3'- aguugaCuGGUAGCGGCG------------CGUCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.