miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23137 3' -53.7 NC_005178.1 + 10198 0.76 0.204623
Target:  5'- -uGGCUGAUCAguUCGCCGCGCuGcGCGa -3'
miRNA:   3'- agUUGACUGGU--AGCGGCGCGuCuUGC- -5'
23137 3' -53.7 NC_005178.1 + 34335 0.67 0.615079
Target:  5'- gCGGCUGA-CGUUGCCgaccuuGCGCAGgAACGc -3'
miRNA:   3'- aGUUGACUgGUAGCGG------CGCGUC-UUGC- -5'
23137 3' -53.7 NC_005178.1 + 29659 0.67 0.602542
Target:  5'- gUAGCUccagGACCGcaucggCGCCGCGCAcagucacGGACGg -3'
miRNA:   3'- aGUUGA----CUGGUa-----GCGGCGCGU-------CUUGC- -5'
23137 3' -53.7 NC_005178.1 + 13259 0.68 0.562935
Target:  5'- cCAGCaguugGACC-UCGCCGUaggcgccaucggcucGCAGGGCGu -3'
miRNA:   3'- aGUUGa----CUGGuAGCGGCG---------------CGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 11375 0.69 0.536176
Target:  5'- gCAGC-GGCCAcCGCCGCGCcGAugAUGa -3'
miRNA:   3'- aGUUGaCUGGUaGCGGCGCGuCU--UGC- -5'
23137 3' -53.7 NC_005178.1 + 3647 0.69 0.525156
Target:  5'- --cGCcGAgCAUCGCCGCcaggcgcgGCAGGACGc -3'
miRNA:   3'- aguUGaCUgGUAGCGGCG--------CGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 31968 0.67 0.660723
Target:  5'- -aAAC-GACCucuUCGCCGCGCuuGAAUc -3'
miRNA:   3'- agUUGaCUGGu--AGCGGCGCGu-CUUGc -5'
23137 3' -53.7 NC_005178.1 + 27515 0.67 0.660723
Target:  5'- --cGCUGGCCAggagCGCggugauuuUGCGCAGcACGg -3'
miRNA:   3'- aguUGACUGGUa---GCG--------GCGCGUCuUGC- -5'
23137 3' -53.7 NC_005178.1 + 5318 0.67 0.626493
Target:  5'- gUCGGCUcGACCAg-GCgGCcCAGGGCGg -3'
miRNA:   3'- -AGUUGA-CUGGUagCGgCGcGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 27896 0.67 0.615079
Target:  5'- cUCGGCgaaGCCAcCgGCCGCGCAGAuCa -3'
miRNA:   3'- -AGUUGac-UGGUaG-CGGCGCGUCUuGc -5'
23137 3' -53.7 NC_005178.1 + 24773 0.69 0.540607
Target:  5'- -gGACUG-CCGgucgaggacguaggCGCgGCGCAGGGCGu -3'
miRNA:   3'- agUUGACuGGUa-------------GCGgCGCGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 6728 0.71 0.401391
Target:  5'- cCGGCUGAUg--CGCCGCGUAG-ACGc -3'
miRNA:   3'- aGUUGACUGguaGCGGCGCGUCuUGC- -5'
23137 3' -53.7 NC_005178.1 + 1781 0.67 0.63106
Target:  5'- gUCGuGCUGcugccaagaguugauGCCGUCGCggacacUGCGCAGGACa -3'
miRNA:   3'- -AGU-UGAC---------------UGGUAGCG------GCGCGUCUUGc -5'
23137 3' -53.7 NC_005178.1 + 36430 0.7 0.440656
Target:  5'- gUUGGCgGGCUAUUGCCGCGguGGAa- -3'
miRNA:   3'- -AGUUGaCUGGUAGCGGCGCguCUUgc -5'
23137 3' -53.7 NC_005178.1 + 27970 0.67 0.60368
Target:  5'- gCGACcGcCCAgcgcagCGCgGCGCAGGGCa -3'
miRNA:   3'- aGUUGaCuGGUa-----GCGgCGCGUCUUGc -5'
23137 3' -53.7 NC_005178.1 + 34573 0.67 0.660723
Target:  5'- cUCGGCaGGCCAUCcgcgcucgggcgGCCGCGaGGAucGCGg -3'
miRNA:   3'- -AGUUGaCUGGUAG------------CGGCGCgUCU--UGC- -5'
23137 3' -53.7 NC_005178.1 + 19907 0.69 0.514222
Target:  5'- gUCAcCUGGCCGgucUUGCCGgCGCuGGACu -3'
miRNA:   3'- -AGUuGACUGGU---AGCGGC-GCGuCUUGc -5'
23137 3' -53.7 NC_005178.1 + 14111 0.67 0.615079
Target:  5'- ---cCUGGCCGUCGCCcugggcgucgGCGUAGuACa -3'
miRNA:   3'- aguuGACUGGUAGCGG----------CGCGUCuUGc -5'
23137 3' -53.7 NC_005178.1 + 17610 0.67 0.626493
Target:  5'- --cGCUGugCGUCGCCGUgGUcuGACGg -3'
miRNA:   3'- aguUGACugGUAGCGGCG-CGucUUGC- -5'
23137 3' -53.7 NC_005178.1 + 26303 0.67 0.626493
Target:  5'- gCAACUGuccGCCAUgGCgGCGUcacucgccAGGGCGa -3'
miRNA:   3'- aGUUGAC---UGGUAgCGgCGCG--------UCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.