miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23147 5' -54.6 NC_005178.1 + 27840 0.66 0.642023
Target:  5'- gAUGACCcaGCAgcugcaacgcaacuACGCCGAcCUCCAGGc -3'
miRNA:   3'- -UGCUGGa-UGU--------------UGCGGUUcGAGGUCCu -5'
23147 5' -54.6 NC_005178.1 + 30751 0.66 0.622583
Target:  5'- cACG-CCgaauauCGACGCCuugGAGCUgaaCCAGGAc -3'
miRNA:   3'- -UGCuGGau----GUUGCGG---UUCGA---GGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 27264 0.66 0.619154
Target:  5'- -gGACCaguUGCAaaccgauuucaggaACGCCGagcagaAGCUCCAGGc -3'
miRNA:   3'- ugCUGG---AUGU--------------UGCGGU------UCGAGGUCCu -5'
23147 5' -54.6 NC_005178.1 + 17312 0.66 0.611157
Target:  5'- cGCGGCCgcuCGGCGUgcgagAGGCUCCAGa- -3'
miRNA:   3'- -UGCUGGau-GUUGCGg----UUCGAGGUCcu -5'
23147 5' -54.6 NC_005178.1 + 22681 0.66 0.59975
Target:  5'- gGCGACCU-CGcccAgGCCGAGCUggaucgCCGGGu -3'
miRNA:   3'- -UGCUGGAuGU---UgCGGUUCGA------GGUCCu -5'
23147 5' -54.6 NC_005178.1 + 7647 0.66 0.59975
Target:  5'- gGCGACCUcCAGCGC-GAGCUggcCCGucuGGAa -3'
miRNA:   3'- -UGCUGGAuGUUGCGgUUCGA---GGU---CCU- -5'
23147 5' -54.6 NC_005178.1 + 14907 0.67 0.588373
Target:  5'- cGCGACCc-CAGCGCCAuccuggugggagGGUUCaauCGGGAg -3'
miRNA:   3'- -UGCUGGauGUUGCGGU------------UCGAG---GUCCU- -5'
23147 5' -54.6 NC_005178.1 + 9521 0.67 0.588373
Target:  5'- -aGACCgcCAGCGCCGccuGGCg-CGGGAa -3'
miRNA:   3'- ugCUGGauGUUGCGGU---UCGagGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 2576 0.67 0.584968
Target:  5'- uCGGCCaGCGcgGCCAAGUaggacgcgcucacgUCCAGGAg -3'
miRNA:   3'- uGCUGGaUGUugCGGUUCG--------------AGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 34808 0.67 0.577037
Target:  5'- gGCGgaccGCCUugGugGCCAccucGC-CCAGGGc -3'
miRNA:   3'- -UGC----UGGAugUugCGGUu---CGaGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 5650 0.67 0.572515
Target:  5'- gAUGACCgGCAGCGCCAucccGGCgacgucggucacgCgGGGAa -3'
miRNA:   3'- -UGCUGGaUGUUGCGGU----UCGa------------GgUCCU- -5'
23147 5' -54.6 NC_005178.1 + 1936 0.67 0.565749
Target:  5'- -aGACCUGgAGCGUCAccgucgccccAGCUuCCGGGc -3'
miRNA:   3'- ugCUGGAUgUUGCGGU----------UCGA-GGUCCu -5'
23147 5' -54.6 NC_005178.1 + 1126 0.67 0.565749
Target:  5'- cGCGGCa-AUAGCccGCCAacuggguguuAGCUCCAGGGc -3'
miRNA:   3'- -UGCUGgaUGUUG--CGGU----------UCGAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 17853 0.67 0.554518
Target:  5'- aGCG-CCUGCcgcccuCGgCGAGgUCCAGGAc -3'
miRNA:   3'- -UGCuGGAUGuu----GCgGUUCgAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 34511 0.67 0.532266
Target:  5'- -gGACCUucgGCAccaggGCGCCAcgcucGGCcuggUCCAGGAa -3'
miRNA:   3'- ugCUGGA---UGU-----UGCGGU-----UCG----AGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 28501 0.68 0.52126
Target:  5'- gUGACCgcgagcGCGGCGCgGcauuGCUCCAGGu -3'
miRNA:   3'- uGCUGGa-----UGUUGCGgUu---CGAGGUCCu -5'
23147 5' -54.6 NC_005178.1 + 18086 0.68 0.52126
Target:  5'- gGCGaACCUgccGCAGCGCCuGGC-CCAGc- -3'
miRNA:   3'- -UGC-UGGA---UGUUGCGGuUCGaGGUCcu -5'
23147 5' -54.6 NC_005178.1 + 25371 0.68 0.52126
Target:  5'- -gGACCgucuuCAGuugugcCGCCGAcuGCUCCAGGAc -3'
miRNA:   3'- ugCUGGau---GUU------GCGGUU--CGAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 412 0.68 0.510344
Target:  5'- -aGGCCUgGCGGCGU--AGCUCCuGGAc -3'
miRNA:   3'- ugCUGGA-UGUUGCGguUCGAGGuCCU- -5'
23147 5' -54.6 NC_005178.1 + 6985 0.68 0.499524
Target:  5'- uGCGACCaccaACGgauCGCCAGGCgCgAGGAa -3'
miRNA:   3'- -UGCUGGa---UGUu--GCGGUUCGaGgUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.