Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23147 | 5' | -54.6 | NC_005178.1 | + | 27840 | 0.66 | 0.642023 |
Target: 5'- gAUGACCcaGCAgcugcaacgcaacuACGCCGAcCUCCAGGc -3' miRNA: 3'- -UGCUGGa-UGU--------------UGCGGUUcGAGGUCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 30751 | 0.66 | 0.622583 |
Target: 5'- cACG-CCgaauauCGACGCCuugGAGCUgaaCCAGGAc -3' miRNA: 3'- -UGCuGGau----GUUGCGG---UUCGA---GGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 27264 | 0.66 | 0.619154 |
Target: 5'- -gGACCaguUGCAaaccgauuucaggaACGCCGagcagaAGCUCCAGGc -3' miRNA: 3'- ugCUGG---AUGU--------------UGCGGU------UCGAGGUCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 17312 | 0.66 | 0.611157 |
Target: 5'- cGCGGCCgcuCGGCGUgcgagAGGCUCCAGa- -3' miRNA: 3'- -UGCUGGau-GUUGCGg----UUCGAGGUCcu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 7647 | 0.66 | 0.59975 |
Target: 5'- gGCGACCUcCAGCGC-GAGCUggcCCGucuGGAa -3' miRNA: 3'- -UGCUGGAuGUUGCGgUUCGA---GGU---CCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 22681 | 0.66 | 0.59975 |
Target: 5'- gGCGACCU-CGcccAgGCCGAGCUggaucgCCGGGu -3' miRNA: 3'- -UGCUGGAuGU---UgCGGUUCGA------GGUCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 9521 | 0.67 | 0.588373 |
Target: 5'- -aGACCgcCAGCGCCGccuGGCg-CGGGAa -3' miRNA: 3'- ugCUGGauGUUGCGGU---UCGagGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 14907 | 0.67 | 0.588373 |
Target: 5'- cGCGACCc-CAGCGCCAuccuggugggagGGUUCaauCGGGAg -3' miRNA: 3'- -UGCUGGauGUUGCGGU------------UCGAG---GUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 2576 | 0.67 | 0.584968 |
Target: 5'- uCGGCCaGCGcgGCCAAGUaggacgcgcucacgUCCAGGAg -3' miRNA: 3'- uGCUGGaUGUugCGGUUCG--------------AGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 34808 | 0.67 | 0.577037 |
Target: 5'- gGCGgaccGCCUugGugGCCAccucGC-CCAGGGc -3' miRNA: 3'- -UGC----UGGAugUugCGGUu---CGaGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 5650 | 0.67 | 0.572515 |
Target: 5'- gAUGACCgGCAGCGCCAucccGGCgacgucggucacgCgGGGAa -3' miRNA: 3'- -UGCUGGaUGUUGCGGU----UCGa------------GgUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 1126 | 0.67 | 0.565749 |
Target: 5'- cGCGGCa-AUAGCccGCCAacuggguguuAGCUCCAGGGc -3' miRNA: 3'- -UGCUGgaUGUUG--CGGU----------UCGAGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 1936 | 0.67 | 0.565749 |
Target: 5'- -aGACCUGgAGCGUCAccgucgccccAGCUuCCGGGc -3' miRNA: 3'- ugCUGGAUgUUGCGGU----------UCGA-GGUCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 17853 | 0.67 | 0.554518 |
Target: 5'- aGCG-CCUGCcgcccuCGgCGAGgUCCAGGAc -3' miRNA: 3'- -UGCuGGAUGuu----GCgGUUCgAGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 34511 | 0.67 | 0.532266 |
Target: 5'- -gGACCUucgGCAccaggGCGCCAcgcucGGCcuggUCCAGGAa -3' miRNA: 3'- ugCUGGA---UGU-----UGCGGU-----UCG----AGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 28501 | 0.68 | 0.52126 |
Target: 5'- gUGACCgcgagcGCGGCGCgGcauuGCUCCAGGu -3' miRNA: 3'- uGCUGGa-----UGUUGCGgUu---CGAGGUCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 25371 | 0.68 | 0.52126 |
Target: 5'- -gGACCgucuuCAGuugugcCGCCGAcuGCUCCAGGAc -3' miRNA: 3'- ugCUGGau---GUU------GCGGUU--CGAGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 18086 | 0.68 | 0.52126 |
Target: 5'- gGCGaACCUgccGCAGCGCCuGGC-CCAGc- -3' miRNA: 3'- -UGC-UGGA---UGUUGCGGuUCGaGGUCcu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 412 | 0.68 | 0.510344 |
Target: 5'- -aGGCCUgGCGGCGU--AGCUCCuGGAc -3' miRNA: 3'- ugCUGGA-UGUUGCGguUCGAGGuCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 6985 | 0.68 | 0.499524 |
Target: 5'- uGCGACCaccaACGgauCGCCAGGCgCgAGGAa -3' miRNA: 3'- -UGCUGGa---UGUu--GCGGUUCGaGgUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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