Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23149 | 3' | -60.5 | NC_005178.1 | + | 13019 | 0.66 | 0.357156 |
Target: 5'- cCCGCCgugaaGGuGCAGCUGcUgGCCAgccUGGCc -3' miRNA: 3'- uGGCGG-----CC-CGUUGACaGgCGGU---ACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 19740 | 0.66 | 0.357156 |
Target: 5'- aACCGCCGcGCucGACcGUcgCCaCCAUGGCg -3' miRNA: 3'- -UGGCGGCcCG--UUGaCA--GGcGGUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 24163 | 0.66 | 0.357156 |
Target: 5'- cCCGCCGaccuGGUGGCUGgcgaugugaUCCGCU-UGGCc -3' miRNA: 3'- uGGCGGC----CCGUUGAC---------AGGCGGuACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 20607 | 0.66 | 0.357156 |
Target: 5'- aACCGauggaGGGCA----UCCGCCAgGGCg -3' miRNA: 3'- -UGGCgg---CCCGUugacAGGCGGUaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 30046 | 0.66 | 0.352106 |
Target: 5'- -gCGCCGGGCcAuucacgcgcuaucacCUGUUCGCCAccGCu -3' miRNA: 3'- ugGCGGCCCGuU---------------GACAGGCGGUacCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 32684 | 0.66 | 0.348767 |
Target: 5'- -aCGCCGaGGCAGCgGUUUcuuggguagGCCAgauUGGCg -3' miRNA: 3'- ugGCGGC-CCGUUGaCAGG---------CGGU---ACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 17595 | 0.66 | 0.348767 |
Target: 5'- uCCGuuGacGGCGgccGCUGUgcgUCGCCGUGGUc -3' miRNA: 3'- uGGCggC--CCGU---UGACA---GGCGGUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 17630 | 0.66 | 0.348767 |
Target: 5'- cACUGCgGcGGC-ACUGgcggcaucgaUCCGCCAgcccGGCa -3' miRNA: 3'- -UGGCGgC-CCGuUGAC----------AGGCGGUa---CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 24961 | 0.66 | 0.346278 |
Target: 5'- uCUGgUGGGCAGCcaaccaggguuuuuUcGUCCGCCgccuGUGGCg -3' miRNA: 3'- uGGCgGCCCGUUG--------------A-CAGGCGG----UACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 23756 | 0.66 | 0.34052 |
Target: 5'- --aGCUGGGCAAUa-UCCGCCAggaagucucUGGUg -3' miRNA: 3'- uggCGGCCCGUUGacAGGCGGU---------ACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 6443 | 0.66 | 0.332415 |
Target: 5'- gGCCGUCGGuGCcgauGCUGaCCGuCCA-GGUg -3' miRNA: 3'- -UGGCGGCC-CGu---UGACaGGC-GGUaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 18090 | 0.66 | 0.324453 |
Target: 5'- aACCuGCCGcaGCGcCUGgcccagcCCGCCAUGGUg -3' miRNA: 3'- -UGG-CGGCc-CGUuGACa------GGCGGUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 35156 | 0.66 | 0.324453 |
Target: 5'- cGCCaGCCGGcuggaggacGUcACUGUCgGCCA-GGCc -3' miRNA: 3'- -UGG-CGGCC---------CGuUGACAGgCGGUaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 23547 | 0.66 | 0.324453 |
Target: 5'- gGCCGuCCGGGUg---GUCCaccaGCUcgGGCa -3' miRNA: 3'- -UGGC-GGCCCGuugaCAGG----CGGuaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 33008 | 0.67 | 0.308957 |
Target: 5'- aACCaCUGGGCGGC-GUCCGgCucgaugGGCa -3' miRNA: 3'- -UGGcGGCCCGUUGaCAGGCgGua----CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 32873 | 0.67 | 0.308957 |
Target: 5'- uAUCGCaaaGGGCGAUguuggcgaUGUCgGCCAugccauUGGCc -3' miRNA: 3'- -UGGCGg--CCCGUUG--------ACAGgCGGU------ACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 25365 | 0.67 | 0.301423 |
Target: 5'- gGCUgGCCGGG-AGCUGUCCGgUuUGGg -3' miRNA: 3'- -UGG-CGGCCCgUUGACAGGCgGuACCg -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 28307 | 0.67 | 0.301423 |
Target: 5'- aGCUGCCgGGGCcGCUGgagUgGCUgGUGGCg -3' miRNA: 3'- -UGGCGG-CCCGuUGACa--GgCGG-UACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 16538 | 0.67 | 0.286783 |
Target: 5'- gGCCGgUGGcGguGCUG-CCGCCcacGGCg -3' miRNA: 3'- -UGGCgGCC-CguUGACaGGCGGua-CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 31587 | 0.67 | 0.279675 |
Target: 5'- gACCGCCGccGGCcugGACcugGUCCGCCccguccaGGCc -3' miRNA: 3'- -UGGCGGC--CCG---UUGa--CAGGCGGua-----CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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