miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23149 3' -60.5 NC_005178.1 + 13019 0.66 0.357156
Target:  5'- cCCGCCgugaaGGuGCAGCUGcUgGCCAgccUGGCc -3'
miRNA:   3'- uGGCGG-----CC-CGUUGACaGgCGGU---ACCG- -5'
23149 3' -60.5 NC_005178.1 + 19740 0.66 0.357156
Target:  5'- aACCGCCGcGCucGACcGUcgCCaCCAUGGCg -3'
miRNA:   3'- -UGGCGGCcCG--UUGaCA--GGcGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 24163 0.66 0.357156
Target:  5'- cCCGCCGaccuGGUGGCUGgcgaugugaUCCGCU-UGGCc -3'
miRNA:   3'- uGGCGGC----CCGUUGAC---------AGGCGGuACCG- -5'
23149 3' -60.5 NC_005178.1 + 20607 0.66 0.357156
Target:  5'- aACCGauggaGGGCA----UCCGCCAgGGCg -3'
miRNA:   3'- -UGGCgg---CCCGUugacAGGCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 30046 0.66 0.352106
Target:  5'- -gCGCCGGGCcAuucacgcgcuaucacCUGUUCGCCAccGCu -3'
miRNA:   3'- ugGCGGCCCGuU---------------GACAGGCGGUacCG- -5'
23149 3' -60.5 NC_005178.1 + 17595 0.66 0.348767
Target:  5'- uCCGuuGacGGCGgccGCUGUgcgUCGCCGUGGUc -3'
miRNA:   3'- uGGCggC--CCGU---UGACA---GGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 32684 0.66 0.348767
Target:  5'- -aCGCCGaGGCAGCgGUUUcuuggguagGCCAgauUGGCg -3'
miRNA:   3'- ugGCGGC-CCGUUGaCAGG---------CGGU---ACCG- -5'
23149 3' -60.5 NC_005178.1 + 17630 0.66 0.348767
Target:  5'- cACUGCgGcGGC-ACUGgcggcaucgaUCCGCCAgcccGGCa -3'
miRNA:   3'- -UGGCGgC-CCGuUGAC----------AGGCGGUa---CCG- -5'
23149 3' -60.5 NC_005178.1 + 24961 0.66 0.346278
Target:  5'- uCUGgUGGGCAGCcaaccaggguuuuuUcGUCCGCCgccuGUGGCg -3'
miRNA:   3'- uGGCgGCCCGUUG--------------A-CAGGCGG----UACCG- -5'
23149 3' -60.5 NC_005178.1 + 23756 0.66 0.34052
Target:  5'- --aGCUGGGCAAUa-UCCGCCAggaagucucUGGUg -3'
miRNA:   3'- uggCGGCCCGUUGacAGGCGGU---------ACCG- -5'
23149 3' -60.5 NC_005178.1 + 6443 0.66 0.332415
Target:  5'- gGCCGUCGGuGCcgauGCUGaCCGuCCA-GGUg -3'
miRNA:   3'- -UGGCGGCC-CGu---UGACaGGC-GGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 23547 0.66 0.324453
Target:  5'- gGCCGuCCGGGUg---GUCCaccaGCUcgGGCa -3'
miRNA:   3'- -UGGC-GGCCCGuugaCAGG----CGGuaCCG- -5'
23149 3' -60.5 NC_005178.1 + 35156 0.66 0.324453
Target:  5'- cGCCaGCCGGcuggaggacGUcACUGUCgGCCA-GGCc -3'
miRNA:   3'- -UGG-CGGCC---------CGuUGACAGgCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 18090 0.66 0.324453
Target:  5'- aACCuGCCGcaGCGcCUGgcccagcCCGCCAUGGUg -3'
miRNA:   3'- -UGG-CGGCc-CGUuGACa------GGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 33008 0.67 0.308957
Target:  5'- aACCaCUGGGCGGC-GUCCGgCucgaugGGCa -3'
miRNA:   3'- -UGGcGGCCCGUUGaCAGGCgGua----CCG- -5'
23149 3' -60.5 NC_005178.1 + 32873 0.67 0.308957
Target:  5'- uAUCGCaaaGGGCGAUguuggcgaUGUCgGCCAugccauUGGCc -3'
miRNA:   3'- -UGGCGg--CCCGUUG--------ACAGgCGGU------ACCG- -5'
23149 3' -60.5 NC_005178.1 + 25365 0.67 0.301423
Target:  5'- gGCUgGCCGGG-AGCUGUCCGgUuUGGg -3'
miRNA:   3'- -UGG-CGGCCCgUUGACAGGCgGuACCg -5'
23149 3' -60.5 NC_005178.1 + 28307 0.67 0.301423
Target:  5'- aGCUGCCgGGGCcGCUGgagUgGCUgGUGGCg -3'
miRNA:   3'- -UGGCGG-CCCGuUGACa--GgCGG-UACCG- -5'
23149 3' -60.5 NC_005178.1 + 16538 0.67 0.286783
Target:  5'- gGCCGgUGGcGguGCUG-CCGCCcacGGCg -3'
miRNA:   3'- -UGGCgGCC-CguUGACaGGCGGua-CCG- -5'
23149 3' -60.5 NC_005178.1 + 31587 0.67 0.279675
Target:  5'- gACCGCCGccGGCcugGACcugGUCCGCCccguccaGGCc -3'
miRNA:   3'- -UGGCGGC--CCG---UUGa--CAGGCGGua-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.