Results 21 - 40 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 23456 | 0.69 | 0.202567 |
Target: 5'- --aCgGCCAgGGC-GCCCGGCGCGa- -3' miRNA: 3'- caaGgUGGUgCCGcCGGGUCGCGUag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 23335 | 0.72 | 0.127035 |
Target: 5'- -gUCUACCugGGCgacgagaucGGCaCCGGgGCGUCg -3' miRNA: 3'- caAGGUGGugCCG---------CCG-GGUCgCGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 22889 | 0.67 | 0.263346 |
Target: 5'- -gUCCuCCAUGGCGGC--GGCGCGc- -3' miRNA: 3'- caAGGuGGUGCCGCCGggUCGCGUag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 22278 | 0.71 | 0.154343 |
Target: 5'- --cCCGCCagGCGGCGggcgaugaaGCCCAGCagaGCGUCg -3' miRNA: 3'- caaGGUGG--UGCCGC---------CGGGUCG---CGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 22116 | 0.7 | 0.158654 |
Target: 5'- -aUCCACgAUGGCGGCCaucGuUGCGUCu -3' miRNA: 3'- caAGGUGgUGCCGCCGGgu-C-GCGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 21873 | 0.67 | 0.284268 |
Target: 5'- -cUCCcCCAacgugcuccUGGuCGGCCCGGCGCu-- -3' miRNA: 3'- caAGGuGGU---------GCC-GCCGGGUCGCGuag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 21205 | 0.69 | 0.199337 |
Target: 5'- --gCCGCCACGGaCGGCaccgaaacccgcuccCCGGCcggccGCAUCa -3' miRNA: 3'- caaGGUGGUGCC-GCCG---------------GGUCG-----CGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 20651 | 0.67 | 0.277152 |
Target: 5'- aUUCCGuCCAUGGa-GCCCugGGCGCGUg -3' miRNA: 3'- cAAGGU-GGUGCCgcCGGG--UCGCGUAg -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 20328 | 0.69 | 0.186864 |
Target: 5'- cGUUCCGCCACGuuccaGGUuaucgaCCAGgGCGUCg -3' miRNA: 3'- -CAAGGUGGUGCcg---CCG------GGUCgCGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 18176 | 0.67 | 0.263346 |
Target: 5'- -cUCUACCcUGGCGGUUCGGCugcgcggugGCGUCu -3' miRNA: 3'- caAGGUGGuGCCGCCGGGUCG---------CGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 17803 | 0.67 | 0.263346 |
Target: 5'- --gCCGCCAUGGUGGCgacgguCgAGCGCGg- -3' miRNA: 3'- caaGGUGGUGCCGCCG------GgUCGCGUag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 17628 | 0.75 | 0.076082 |
Target: 5'- --aUCACUGCGGCGGCaCUGGCgGCAUCg -3' miRNA: 3'- caaGGUGGUGCCGCCG-GGUCG-CGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 17592 | 0.75 | 0.069762 |
Target: 5'- cGUUCCGuuGaCGGCGGCCgCuGUGCGUCg -3' miRNA: 3'- -CAAGGUggU-GCCGCCGG-GuCGCGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 15282 | 0.68 | 0.243693 |
Target: 5'- --cCCGCCGCcuGGCGGgCCAGCcugGCgGUCg -3' miRNA: 3'- caaGGUGGUG--CCGCCgGGUCG---CG-UAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 14146 | 0.68 | 0.219402 |
Target: 5'- --gUCAgCACGGCuGCCCAGUGCu-- -3' miRNA: 3'- caaGGUgGUGCCGcCGGGUCGCGuag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 14014 | 0.66 | 0.317294 |
Target: 5'- --aCCACC-CGGaCGGCCagcacgaagccauugCGGCGCcgCg -3' miRNA: 3'- caaGGUGGuGCC-GCCGG---------------GUCGCGuaG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 13888 | 0.66 | 0.322015 |
Target: 5'- --gCCGCC-CGGCgugaacGGgCCAGCGCGg- -3' miRNA: 3'- caaGGUGGuGCCG------CCgGGUCGCGUag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 13551 | 0.69 | 0.191976 |
Target: 5'- --cUCGCCuauGCGGCGGgUCAGCGuCGUCu -3' miRNA: 3'- caaGGUGG---UGCCGCCgGGUCGC-GUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 12095 | 0.69 | 0.20805 |
Target: 5'- uUUCCGCCA--GCGcGUCCAGCGCuUCc -3' miRNA: 3'- cAAGGUGGUgcCGC-CGGGUCGCGuAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 11780 | 0.67 | 0.277152 |
Target: 5'- gGUUCCGCCGCaGGcCGGCCU-GCaCAUg -3' miRNA: 3'- -CAAGGUGGUG-CC-GCCGGGuCGcGUAg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home