miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 5' -56.1 NC_005178.1 + 28760 0.66 0.566536
Target:  5'- cCUGGUGCGGcucagcgguugcaaaGACCGCCGCCc----- -3'
miRNA:   3'- aGGUCGCGCC---------------UUGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 5494 0.66 0.529181
Target:  5'- aUCCAGCGCGG--UCGCCAguugCGAg--- -3'
miRNA:   3'- -AGGUCGCGCCuuGGCGGUg---GCUaaag -5'
23158 5' -56.1 NC_005178.1 + 29285 0.68 0.406444
Target:  5'- cUCCAGUGCGuccCCGCCcUCGGUUUg -3'
miRNA:   3'- -AGGUCGCGCcuuGGCGGuGGCUAAAg -5'
23158 5' -56.1 NC_005178.1 + 14325 0.69 0.387762
Target:  5'- cUCGGCGCGGAugCGCUcgACCa----- -3'
miRNA:   3'- aGGUCGCGCCUugGCGG--UGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 25123 0.69 0.386842
Target:  5'- -gCGGCGgcauCGGGguugucaucagucACCGCCACCGGggUCg -3'
miRNA:   3'- agGUCGC----GCCU-------------UGGCGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 10943 0.73 0.202347
Target:  5'- aUCCGGCGCGGcccGCCuccuGCCccccgcgucaccacACCGAUUUCc -3'
miRNA:   3'- -AGGUCGCGCCu--UGG----CGG--------------UGGCUAAAG- -5'
23158 5' -56.1 NC_005178.1 + 35414 0.77 0.123202
Target:  5'- cCCGGCGCuG-GCCGCCACCGAc--- -3'
miRNA:   3'- aGGUCGCGcCuUGGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 3772 0.66 0.551058
Target:  5'- gCCaAGgGCGGcACCauGCCGCUGAUgUCu -3'
miRNA:   3'- aGG-UCgCGCCuUGG--CGGUGGCUAaAG- -5'
23158 5' -56.1 NC_005178.1 + 22540 0.66 0.540083
Target:  5'- cCCAGCagaGGGACCGCCcCUGGc--- -3'
miRNA:   3'- aGGUCGcg-CCUUGGCGGuGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 26178 0.67 0.496997
Target:  5'- aUCGGCGCGGcgguGGCCGCUGCgGGc--- -3'
miRNA:   3'- aGGUCGCGCC----UUGGCGGUGgCUaaag -5'
23158 5' -56.1 NC_005178.1 + 21010 0.69 0.378635
Target:  5'- gCCGuGgGCGGcagcACCGCCACCGGc--- -3'
miRNA:   3'- aGGU-CgCGCCu---UGGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 1973 0.7 0.335206
Target:  5'- uUCCgacguGGCGCgGGAACCGCUGCagcaGAggUCg -3'
miRNA:   3'- -AGG-----UCGCG-CCUUGGCGGUGg---CUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 8832 0.7 0.32697
Target:  5'- cCCGGCGCGugccggguguGAGCCccgacGCCACCGAc--- -3'
miRNA:   3'- aGGUCGCGC----------CUUGG-----CGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 13814 0.7 0.310949
Target:  5'- cCCAGCuuGCGGGggaguuccGCCGCCagaucgagGCCGAggUCg -3'
miRNA:   3'- aGGUCG--CGCCU--------UGGCGG--------UGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 11141 0.74 0.182288
Target:  5'- aUCAGCGCGGGcgcccugGCCGCCGCCc----- -3'
miRNA:   3'- aGGUCGCGCCU-------UGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 25077 0.68 0.445451
Target:  5'- aCCAGCGCGaccagcucGGCCGCuaCACCGAg--- -3'
miRNA:   3'- aGGUCGCGCc-------UUGGCG--GUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 35076 0.68 0.454513
Target:  5'- aCCGGCGacuggugcccgacCGGAcuACuCGCCGCCGAg--- -3'
miRNA:   3'- aGGUCGC-------------GCCU--UG-GCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 17257 0.67 0.476038
Target:  5'- uUCCAGCGC--AACCuGCgGCCGAUc-- -3'
miRNA:   3'- -AGGUCGCGccUUGG-CGgUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 9536 0.67 0.486464
Target:  5'- cCUGGCGCGGGAaCGCCAaCGAg--- -3'
miRNA:   3'- aGGUCGCGCCUUgGCGGUgGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 2980 0.67 0.486464
Target:  5'- cCCgAGCGCGG-AUgGCUGCCGAg--- -3'
miRNA:   3'- aGG-UCGCGCCuUGgCGGUGGCUaaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.