miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23160 5' -59.5 NC_005178.1 + 33485 0.66 0.402465
Target:  5'- uGGUC-GCCGUGGaauuccUCCAGCuCgCGGGCg -3'
miRNA:   3'- cUUAGuCGGCACU------GGGUCGcG-GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 17216 0.66 0.402465
Target:  5'- --cUCGGUCGUGccuucuUCCAGCGacaGGGCc -3'
miRNA:   3'- cuuAGUCGGCACu-----GGGUCGCgg-CCCG- -5'
23160 5' -59.5 NC_005178.1 + 1946 0.66 0.393306
Target:  5'- -cGUCA-CCGUcGcCCCAGCuuCCGGGCc -3'
miRNA:   3'- cuUAGUcGGCA-CuGGGUCGc-GGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 25812 0.66 0.393306
Target:  5'- ---aCGGCCGUGGCauauGCGC-GGGUg -3'
miRNA:   3'- cuuaGUCGGCACUGggu-CGCGgCCCG- -5'
23160 5' -59.5 NC_005178.1 + 33927 0.66 0.384283
Target:  5'- ---gCGGCCG-GugCCGGCuuuCCGGGg -3'
miRNA:   3'- cuuaGUCGGCaCugGGUCGc--GGCCCg -5'
23160 5' -59.5 NC_005178.1 + 6034 0.66 0.384283
Target:  5'- cGAAUCaggcggcugaAGCCGUGAUgaagaCGGUGCCGaGGg -3'
miRNA:   3'- -CUUAG----------UCGGCACUGg----GUCGCGGC-CCg -5'
23160 5' -59.5 NC_005178.1 + 5269 0.66 0.375398
Target:  5'- cAGUUGGCCGaGGCCgccaccguuCAGgGCCGGcGCg -3'
miRNA:   3'- cUUAGUCGGCaCUGG---------GUCgCGGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 21983 0.66 0.375398
Target:  5'- cGAUCAGgaUGUGAgCCAGCuugGCUGGGg -3'
miRNA:   3'- cUUAGUCg-GCACUgGGUCG---CGGCCCg -5'
23160 5' -59.5 NC_005178.1 + 5645 0.66 0.375398
Target:  5'- ----uGGCCGaUGACCggCAGCGCCaucccGGCg -3'
miRNA:   3'- cuuagUCGGC-ACUGG--GUCGCGGc----CCG- -5'
23160 5' -59.5 NC_005178.1 + 16280 0.66 0.375398
Target:  5'- --cUCGGCCGagccguucaUGGCCaugauGCGCUGGuGCg -3'
miRNA:   3'- cuuAGUCGGC---------ACUGGgu---CGCGGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 6219 0.66 0.375398
Target:  5'- ----gAGCCGUGGgUuCAGuCGUCGGGCc -3'
miRNA:   3'- cuuagUCGGCACUgG-GUC-GCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 7507 0.66 0.366653
Target:  5'- ---aUAGCgCGUGaaugGCCCGGCGCUGaGCu -3'
miRNA:   3'- cuuaGUCG-GCAC----UGGGUCGCGGCcCG- -5'
23160 5' -59.5 NC_005178.1 + 23283 0.66 0.366653
Target:  5'- cGAUCuGGCCacccuUGACgaaCAGCGCCaGGGCu -3'
miRNA:   3'- cUUAG-UCGGc----ACUGg--GUCGCGG-CCCG- -5'
23160 5' -59.5 NC_005178.1 + 14851 0.66 0.35805
Target:  5'- --cUCGGCaGcGACCCGGCGauccagcucggcCUGGGCg -3'
miRNA:   3'- cuuAGUCGgCaCUGGGUCGC------------GGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 28952 0.67 0.352956
Target:  5'- ---aCGGCCaucgccgugcgccagGUGACCCugcGCGCCccuggccuGGGCg -3'
miRNA:   3'- cuuaGUCGG---------------CACUGGGu--CGCGG--------CCCG- -5'
23160 5' -59.5 NC_005178.1 + 24450 0.67 0.349588
Target:  5'- ---aUAGCgGUGG-CCAGCGCugauguuuCGGGCa -3'
miRNA:   3'- cuuaGUCGgCACUgGGUCGCG--------GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 8060 0.67 0.349588
Target:  5'- -uAUCGGCCGcaGCCCAGCGggaGGaGCg -3'
miRNA:   3'- cuUAGUCGGCacUGGGUCGCgg-CC-CG- -5'
23160 5' -59.5 NC_005178.1 + 12958 0.67 0.349588
Target:  5'- ---cCGGCCugGUGACCCAGU-CCaGGCc -3'
miRNA:   3'- cuuaGUCGG--CACUGGGUCGcGGcCCG- -5'
23160 5' -59.5 NC_005178.1 + 3231 0.67 0.341271
Target:  5'- -cGUCAGCCGcGAggUCgGGCGCaUGGGUg -3'
miRNA:   3'- cuUAGUCGGCaCU--GGgUCGCG-GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 9637 0.67 0.336349
Target:  5'- gGAGUCGauguagucagcgaacGCCGacgucgccccguUGACCCAGuUGCCcuGGGCg -3'
miRNA:   3'- -CUUAGU---------------CGGC------------ACUGGGUC-GCGG--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.