Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23160 | 5' | -59.5 | NC_005178.1 | + | 33485 | 0.66 | 0.402465 |
Target: 5'- uGGUC-GCCGUGGaauuccUCCAGCuCgCGGGCg -3' miRNA: 3'- cUUAGuCGGCACU------GGGUCGcG-GCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 17216 | 0.66 | 0.402465 |
Target: 5'- --cUCGGUCGUGccuucuUCCAGCGacaGGGCc -3' miRNA: 3'- cuuAGUCGGCACu-----GGGUCGCgg-CCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 1946 | 0.66 | 0.393306 |
Target: 5'- -cGUCA-CCGUcGcCCCAGCuuCCGGGCc -3' miRNA: 3'- cuUAGUcGGCA-CuGGGUCGc-GGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 25812 | 0.66 | 0.393306 |
Target: 5'- ---aCGGCCGUGGCauauGCGC-GGGUg -3' miRNA: 3'- cuuaGUCGGCACUGggu-CGCGgCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 33927 | 0.66 | 0.384283 |
Target: 5'- ---gCGGCCG-GugCCGGCuuuCCGGGg -3' miRNA: 3'- cuuaGUCGGCaCugGGUCGc--GGCCCg -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 6034 | 0.66 | 0.384283 |
Target: 5'- cGAAUCaggcggcugaAGCCGUGAUgaagaCGGUGCCGaGGg -3' miRNA: 3'- -CUUAG----------UCGGCACUGg----GUCGCGGC-CCg -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 5269 | 0.66 | 0.375398 |
Target: 5'- cAGUUGGCCGaGGCCgccaccguuCAGgGCCGGcGCg -3' miRNA: 3'- cUUAGUCGGCaCUGG---------GUCgCGGCC-CG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 21983 | 0.66 | 0.375398 |
Target: 5'- cGAUCAGgaUGUGAgCCAGCuugGCUGGGg -3' miRNA: 3'- cUUAGUCg-GCACUgGGUCG---CGGCCCg -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 5645 | 0.66 | 0.375398 |
Target: 5'- ----uGGCCGaUGACCggCAGCGCCaucccGGCg -3' miRNA: 3'- cuuagUCGGC-ACUGG--GUCGCGGc----CCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 16280 | 0.66 | 0.375398 |
Target: 5'- --cUCGGCCGagccguucaUGGCCaugauGCGCUGGuGCg -3' miRNA: 3'- cuuAGUCGGC---------ACUGGgu---CGCGGCC-CG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 6219 | 0.66 | 0.375398 |
Target: 5'- ----gAGCCGUGGgUuCAGuCGUCGGGCc -3' miRNA: 3'- cuuagUCGGCACUgG-GUC-GCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 7507 | 0.66 | 0.366653 |
Target: 5'- ---aUAGCgCGUGaaugGCCCGGCGCUGaGCu -3' miRNA: 3'- cuuaGUCG-GCAC----UGGGUCGCGGCcCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 23283 | 0.66 | 0.366653 |
Target: 5'- cGAUCuGGCCacccuUGACgaaCAGCGCCaGGGCu -3' miRNA: 3'- cUUAG-UCGGc----ACUGg--GUCGCGG-CCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 14851 | 0.66 | 0.35805 |
Target: 5'- --cUCGGCaGcGACCCGGCGauccagcucggcCUGGGCg -3' miRNA: 3'- cuuAGUCGgCaCUGGGUCGC------------GGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 28952 | 0.67 | 0.352956 |
Target: 5'- ---aCGGCCaucgccgugcgccagGUGACCCugcGCGCCccuggccuGGGCg -3' miRNA: 3'- cuuaGUCGG---------------CACUGGGu--CGCGG--------CCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 24450 | 0.67 | 0.349588 |
Target: 5'- ---aUAGCgGUGG-CCAGCGCugauguuuCGGGCa -3' miRNA: 3'- cuuaGUCGgCACUgGGUCGCG--------GCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 8060 | 0.67 | 0.349588 |
Target: 5'- -uAUCGGCCGcaGCCCAGCGggaGGaGCg -3' miRNA: 3'- cuUAGUCGGCacUGGGUCGCgg-CC-CG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 12958 | 0.67 | 0.349588 |
Target: 5'- ---cCGGCCugGUGACCCAGU-CCaGGCc -3' miRNA: 3'- cuuaGUCGG--CACUGGGUCGcGGcCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 3231 | 0.67 | 0.341271 |
Target: 5'- -cGUCAGCCGcGAggUCgGGCGCaUGGGUg -3' miRNA: 3'- cuUAGUCGGCaCU--GGgUCGCG-GCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 9637 | 0.67 | 0.336349 |
Target: 5'- gGAGUCGauguagucagcgaacGCCGacgucgccccguUGACCCAGuUGCCcuGGGCg -3' miRNA: 3'- -CUUAGU---------------CGGC------------ACUGGGUC-GCGG--CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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