Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 12669 | 0.69 | 0.404015 |
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Target: 5'- cGCUG-GCGGGugGCCUGGUUGCCu-GCg -3' miRNA: 3'- aCGACaUGUUC--UGGGCCAGCGGcuCG- -5' |
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| 23164 | 3' | -56.1 | NC_005178.1 | + | 12644 | 0.67 | 0.483542 |
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Target: 5'- gUGCUGUAC--GGCUCGG-CGgCCG-GCg -3' miRNA: 3'- -ACGACAUGuuCUGGGCCaGC-GGCuCG- -5' |
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| 23164 | 3' | -56.1 | NC_005178.1 | + | 11292 | 0.73 | 0.203009 |
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Target: 5'- aGCUGUuCGAGuccGCCCagguGGUgGCCGGGCu -3' miRNA: 3'- aCGACAuGUUC---UGGG----CCAgCGGCUCG- -5' |
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| 23164 | 3' | -56.1 | NC_005178.1 | + | 10452 | 0.69 | 0.376392 |
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Target: 5'- cGCUGguacggugGCGcGAUCUGGagaUCGUCGAGCg -3' miRNA: 3'- aCGACa-------UGUuCUGGGCC---AGCGGCUCG- -5' |
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| 23164 | 3' | -56.1 | NC_005178.1 | + | 8189 | 0.67 | 0.490863 |
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Target: 5'- cUGCUGaUGCcccGGugCCGGUCGCuaacgucggaccagCGGGUu -3' miRNA: 3'- -ACGAC-AUGu--UCugGGCCAGCG--------------GCUCG- -5' |
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| 23164 | 3' | -56.1 | NC_005178.1 | + | 7777 | 0.68 | 0.452786 |
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Target: 5'- aGUccugGUGCGAGGCCaaccgUGCCGAGCu -3' miRNA: 3'- aCGa---CAUGUUCUGGgcca-GCGGCUCG- -5' |
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| 23164 | 3' | -56.1 | NC_005178.1 | + | 7511 | 0.72 | 0.25821 |
|
Target: 5'- cGC-GUGaauGGCCCGG-CGCUGAGCu -3' miRNA: 3'- aCGaCAUguuCUGGGCCaGCGGCUCG- -5' |
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| 23164 | 3' | -56.1 | NC_005178.1 | + | 6718 | 0.7 | 0.341594 |
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Target: 5'- cUGCUGaGCcaggAGGugCCGccaugCGCCGAGCa -3' miRNA: 3'- -ACGACaUG----UUCugGGCca---GCGGCUCG- -5' |
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| 23164 | 3' | -56.1 | NC_005178.1 | + | 5342 | 0.66 | 0.569847 |
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Target: 5'- aGCUGUACAccGGugC-GGcC-CCGAGCc -3' miRNA: 3'- aCGACAUGU--UCugGgCCaGcGGCUCG- -5' |
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| 23164 | 3' | -56.1 | NC_005178.1 | + | 332 | 0.67 | 0.494016 |
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Target: 5'- gGCUGU-CAGG-UCCGG-CGCUGuGCc -3' miRNA: 3'- aCGACAuGUUCuGGGCCaGCGGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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