miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23167 5' -60.7 NC_005178.1 + 37081 0.69 0.230304
Target:  5'- aCUcGCUGGCGuccCggUCGGCGaccUGGCGUu -3'
miRNA:   3'- aGA-CGGCCGCu--GuuGGCCGC---ACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 36785 0.67 0.311406
Target:  5'- gCUGCU--UGAUAGCCGGCGagcauUGGCGa -3'
miRNA:   3'- aGACGGccGCUGUUGGCCGC-----ACCGCg -5'
23167 5' -60.7 NC_005178.1 + 34817 1.1 0.000149
Target:  5'- aUCUGCCGGCGACAACCGGCGUGGCGCc -3'
miRNA:   3'- -AGACGGCCGCUGUUGGCCGCACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 33910 0.72 0.142573
Target:  5'- cCUGgCGGCGAUGcUCGGCGgccGGUGCc -3'
miRNA:   3'- aGACgGCCGCUGUuGGCCGCa--CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 33667 0.72 0.129879
Target:  5'- -gUGgCGGCGGCGGCCGGUGUucgggucaacgauGCGCg -3'
miRNA:   3'- agACgGCCGCUGUUGGCCGCAc------------CGCG- -5'
23167 5' -60.7 NC_005178.1 + 33589 0.75 0.081676
Target:  5'- -gUGCUGGUcGCGACCGGCGacGCGCu -3'
miRNA:   3'- agACGGCCGcUGUUGGCCGCacCGCG- -5'
23167 5' -60.7 NC_005178.1 + 32754 0.7 0.196879
Target:  5'- --gGCgCGGCGGCGAUUGGCGauccaGGCGg -3'
miRNA:   3'- agaCG-GCCGCUGUUGGCCGCa----CCGCg -5'
23167 5' -60.7 NC_005178.1 + 32608 0.66 0.351102
Target:  5'- aUCaGCgGGCGGCcGCUGGCGgccaguuccucGGCGa -3'
miRNA:   3'- -AGaCGgCCGCUGuUGGCCGCa----------CCGCg -5'
23167 5' -60.7 NC_005178.1 + 32423 0.68 0.275214
Target:  5'- --aGCCGGUG-CGGCUGuaucaguucaGcCGUGGCGCg -3'
miRNA:   3'- agaCGGCCGCuGUUGGC----------C-GCACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 31768 0.75 0.083781
Target:  5'- -aUGCCGGCGACGACCuacagggGGCGgccaGUGCu -3'
miRNA:   3'- agACGGCCGCUGUUGG-------CCGCac--CGCG- -5'
23167 5' -60.7 NC_005178.1 + 31699 0.67 0.29651
Target:  5'- --gGCCGGUGuaGCGGCCuGGCuugagGGCGUa -3'
miRNA:   3'- agaCGGCCGC--UGUUGG-CCGca---CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 30803 0.66 0.326864
Target:  5'- gUCgcgGCCu-CGACcugGGCCGGCGUcuacgcGGCGCa -3'
miRNA:   3'- -AGa--CGGccGCUG---UUGGCCGCA------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 30114 0.7 0.189714
Target:  5'- gCUGCCGGUcaguuccguccaguGAUGAUCGGCucccucaacaagcGUGGCGUc -3'
miRNA:   3'- aGACGGCCG--------------CUGUUGGCCG-------------CACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 28948 0.71 0.154706
Target:  5'- --gGCCGGaGACuuCCGGCGagcgcgUGGUGCa -3'
miRNA:   3'- agaCGGCCgCUGuuGGCCGC------ACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 28496 0.69 0.230304
Target:  5'- --gGCCGGUGACcg-CGaGCGcGGCGCg -3'
miRNA:   3'- agaCGGCCGCUGuugGC-CGCaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 28308 0.68 0.248746
Target:  5'- gCUGCCGG-GGCcGCUGGaGUGGCu- -3'
miRNA:   3'- aGACGGCCgCUGuUGGCCgCACCGcg -5'
23167 5' -60.7 NC_005178.1 + 28196 0.69 0.226757
Target:  5'- --cGCCcuGGCGACuGCUGGCGgcacgcuccugagcGGCGCc -3'
miRNA:   3'- agaCGG--CCGCUGuUGGCCGCa-------------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 27959 0.66 0.367957
Target:  5'- -aUGuuGaaGCGGCGACCGcccagcgcaGCGcGGCGCa -3'
miRNA:   3'- agACggC--CGCUGUUGGC---------CGCaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 27887 0.66 0.35946
Target:  5'- cUCgGCCGGCucGGCGaagccACCGGCc--GCGCa -3'
miRNA:   3'- -AGaCGGCCG--CUGU-----UGGCCGcacCGCG- -5'
23167 5' -60.7 NC_005178.1 + 26401 0.67 0.311406
Target:  5'- --aGCCcagGGCGGCGGCCagGGCGcccGCGCu -3'
miRNA:   3'- agaCGG---CCGCUGUUGG--CCGCac-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.