Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 51211 | 0.7 | 0.708714 |
Target: 5'- cGAGCgugCGCACCgcgauagcgaggccgGUGAGCu-CAGCGAg -3' miRNA: 3'- -CUCGa--GCGUGGa--------------CGCUUGuuGUUGCU- -5' |
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23191 | 5' | -52.2 | NC_005259.1 | + | 32759 | 0.71 | 0.630164 |
Target: 5'- cAGCgcgaGCGCCUGCGu-CGGCAGCGc -3' miRNA: 3'- cUCGag--CGUGGACGCuuGUUGUUGCu -5' |
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23191 | 5' | -52.2 | NC_005259.1 | + | 68041 | 0.72 | 0.552729 |
Target: 5'- cAGCUCGCGCaacgGCucAACGGCGACGAg -3' miRNA: 3'- cUCGAGCGUGga--CGc-UUGUUGUUGCU- -5' |
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23191 | 5' | -52.2 | NC_005259.1 | + | 49797 | 0.74 | 0.468151 |
Target: 5'- cGAGCUCGUgg-UGCGGGCGGCGACGu -3' miRNA: 3'- -CUCGAGCGuggACGCUUGUUGUUGCu -5' |
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23191 | 5' | -52.2 | NC_005259.1 | + | 57866 | 0.74 | 0.467134 |
Target: 5'- cGAGC-CGuCGCCUGCGggUAACAcuucgguGCGGc -3' miRNA: 3'- -CUCGaGC-GUGGACGCuuGUUGU-------UGCU- -5' |
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23191 | 5' | -52.2 | NC_005259.1 | + | 8003 | 0.75 | 0.418783 |
Target: 5'- uGAGCUCGCGCCcgucgacgGUGAGCuuccacucgguGGCGGCGAg -3' miRNA: 3'- -CUCGAGCGUGGa-------CGCUUG-----------UUGUUGCU- -5' |
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23191 | 5' | -52.2 | NC_005259.1 | + | 3559 | 1.09 | 0.00239 |
Target: 5'- uGAGCUCGCACCUGCGAACAACAACGAg -3' miRNA: 3'- -CUCGAGCGUGGACGCUUGUUGUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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