miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23191 5' -52.2 NC_005259.1 + 51211 0.7 0.708714
Target:  5'- cGAGCgugCGCACCgcgauagcgaggccgGUGAGCu-CAGCGAg -3'
miRNA:   3'- -CUCGa--GCGUGGa--------------CGCUUGuuGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 32759 0.71 0.630164
Target:  5'- cAGCgcgaGCGCCUGCGu-CGGCAGCGc -3'
miRNA:   3'- cUCGag--CGUGGACGCuuGUUGUUGCu -5'
23191 5' -52.2 NC_005259.1 + 68041 0.72 0.552729
Target:  5'- cAGCUCGCGCaacgGCucAACGGCGACGAg -3'
miRNA:   3'- cUCGAGCGUGga--CGc-UUGUUGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 49797 0.74 0.468151
Target:  5'- cGAGCUCGUgg-UGCGGGCGGCGACGu -3'
miRNA:   3'- -CUCGAGCGuggACGCUUGUUGUUGCu -5'
23191 5' -52.2 NC_005259.1 + 57866 0.74 0.467134
Target:  5'- cGAGC-CGuCGCCUGCGggUAACAcuucgguGCGGc -3'
miRNA:   3'- -CUCGaGC-GUGGACGCuuGUUGU-------UGCU- -5'
23191 5' -52.2 NC_005259.1 + 8003 0.75 0.418783
Target:  5'- uGAGCUCGCGCCcgucgacgGUGAGCuuccacucgguGGCGGCGAg -3'
miRNA:   3'- -CUCGAGCGUGGa-------CGCUUG-----------UUGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 3559 1.09 0.00239
Target:  5'- uGAGCUCGCACCUGCGAACAACAACGAg -3'
miRNA:   3'- -CUCGAGCGUGGACGCUUGUUGUUGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.