miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23192 3' -50.4 NC_005259.1 + 6154 0.7 0.834253
Target:  5'- gCGCGCGGuUGAcg-AGCAGCCGcuCGGc -3'
miRNA:   3'- -GCGCGUU-ACUucaUCGUCGGUauGCC- -5'
23192 3' -50.4 NC_005259.1 + 41083 0.71 0.755402
Target:  5'- cCGCGCGGgu-GGUAGCGGUUcgGCGa -3'
miRNA:   3'- -GCGCGUUacuUCAUCGUCGGuaUGCc -5'
23192 3' -50.4 NC_005259.1 + 9585 0.74 0.623386
Target:  5'- uCGCGC-AUGgcGUcGGCGGCCAUgaagaACGGc -3'
miRNA:   3'- -GCGCGuUACuuCA-UCGUCGGUA-----UGCC- -5'
23192 3' -50.4 NC_005259.1 + 51396 0.74 0.60098
Target:  5'- gGCGCGAUGAcGUggGGCGGCgAggACGGu -3'
miRNA:   3'- gCGCGUUACUuCA--UCGUCGgUa-UGCC- -5'
23192 3' -50.4 NC_005259.1 + 65906 0.77 0.41174
Target:  5'- cCGCGCAgcgAUGAGcgGGCGGCCAUugcGCGGc -3'
miRNA:   3'- -GCGCGU---UACUUcaUCGUCGGUA---UGCC- -5'
23192 3' -50.4 NC_005259.1 + 4525 1.13 0.002187
Target:  5'- aCGCGCAAUGAAGUAGCAGCCAUACGGg -3'
miRNA:   3'- -GCGCGUUACUUCAUCGUCGGUAUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.