Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23192 | 3' | -50.4 | NC_005259.1 | + | 6154 | 0.7 | 0.834253 |
Target: 5'- gCGCGCGGuUGAcg-AGCAGCCGcuCGGc -3' miRNA: 3'- -GCGCGUU-ACUucaUCGUCGGUauGCC- -5' |
|||||||
23192 | 3' | -50.4 | NC_005259.1 | + | 41083 | 0.71 | 0.755402 |
Target: 5'- cCGCGCGGgu-GGUAGCGGUUcgGCGa -3' miRNA: 3'- -GCGCGUUacuUCAUCGUCGGuaUGCc -5' |
|||||||
23192 | 3' | -50.4 | NC_005259.1 | + | 9585 | 0.74 | 0.623386 |
Target: 5'- uCGCGC-AUGgcGUcGGCGGCCAUgaagaACGGc -3' miRNA: 3'- -GCGCGuUACuuCA-UCGUCGGUA-----UGCC- -5' |
|||||||
23192 | 3' | -50.4 | NC_005259.1 | + | 51396 | 0.74 | 0.60098 |
Target: 5'- gGCGCGAUGAcGUggGGCGGCgAggACGGu -3' miRNA: 3'- gCGCGUUACUuCA--UCGUCGgUa-UGCC- -5' |
|||||||
23192 | 3' | -50.4 | NC_005259.1 | + | 65906 | 0.77 | 0.41174 |
Target: 5'- cCGCGCAgcgAUGAGcgGGCGGCCAUugcGCGGc -3' miRNA: 3'- -GCGCGU---UACUUcaUCGUCGGUA---UGCC- -5' |
|||||||
23192 | 3' | -50.4 | NC_005259.1 | + | 4525 | 1.13 | 0.002187 |
Target: 5'- aCGCGCAAUGAAGUAGCAGCCAUACGGg -3' miRNA: 3'- -GCGCGUUACUUCAUCGUCGGUAUGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home