miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 5' -62.7 NC_005259.1 + 17934 0.66 0.446963
Target:  5'- aAUCGAGCaGCgCC-UCGGUGGcaugGCCCa -3'
miRNA:   3'- cUGGCUCGcCG-GGcAGCCGCUa---CGGG- -5'
23193 5' -62.7 NC_005259.1 + 27611 0.66 0.446963
Target:  5'- uGGCCGguacccauGGCGcGCCgcUCGG-GGUGCCCa -3'
miRNA:   3'- -CUGGC--------UCGC-CGGgcAGCCgCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 42849 0.66 0.437891
Target:  5'- aGGCCGAGCaGCCCGaaa---AUGCCCg -3'
miRNA:   3'- -CUGGCUCGcCGGGCagccgcUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 66922 0.66 0.437891
Target:  5'- aAUUGGGCgGGCCUGcucgauuucaUCGGCGAgGCCa -3'
miRNA:   3'- cUGGCUCG-CCGGGC----------AGCCGCUaCGGg -5'
23193 5' -62.7 NC_005259.1 + 65029 0.66 0.437891
Target:  5'- gGACCuGAGCGGuCCCG-CGagcacGCGAUGgCg -3'
miRNA:   3'- -CUGG-CUCGCC-GGGCaGC-----CGCUACgGg -5'
23193 5' -62.7 NC_005259.1 + 23909 0.66 0.428926
Target:  5'- -gUCGAGCGuGCCCGUguagcCGGUcgggccgagaguGGUGCCg -3'
miRNA:   3'- cuGGCUCGC-CGGGCA-----GCCG------------CUACGGg -5'
23193 5' -62.7 NC_005259.1 + 44193 0.66 0.428926
Target:  5'- aGACCGAG-GuGCCC--CGGCacgccGUGCCCg -3'
miRNA:   3'- -CUGGCUCgC-CGGGcaGCCGc----UACGGG- -5'
23193 5' -62.7 NC_005259.1 + 57687 0.66 0.428926
Target:  5'- aGGCCGAGacgGGCgcgcagcucgUCGUCGGUcAUGCCg -3'
miRNA:   3'- -CUGGCUCg--CCG----------GGCAGCCGcUACGGg -5'
23193 5' -62.7 NC_005259.1 + 27942 0.66 0.420069
Target:  5'- cACCGAGUGcGCCCa-CGGCucGAUGUCa -3'
miRNA:   3'- cUGGCUCGC-CGGGcaGCCG--CUACGGg -5'
23193 5' -62.7 NC_005259.1 + 46271 0.66 0.411325
Target:  5'- cGCCGAGCGccaGCCCGUauacgaGGCGuaccgaaacgGCaCCg -3'
miRNA:   3'- cUGGCUCGC---CGGGCAg-----CCGCua--------CG-GG- -5'
23193 5' -62.7 NC_005259.1 + 64311 0.66 0.411325
Target:  5'- gGGCCGAcagcuCGGcCCCGUgGuGCGAUgaccgcGCCCg -3'
miRNA:   3'- -CUGGCUc----GCC-GGGCAgC-CGCUA------CGGG- -5'
23193 5' -62.7 NC_005259.1 + 40246 0.66 0.411325
Target:  5'- -cCCGAGCGuGagaUCGUCGcCGGUGCCg -3'
miRNA:   3'- cuGGCUCGC-Cg--GGCAGCcGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 55899 0.66 0.402694
Target:  5'- cACCGAcccCGGCCCGcUCGGCG--GCUa -3'
miRNA:   3'- cUGGCUc--GCCGGGC-AGCCGCuaCGGg -5'
23193 5' -62.7 NC_005259.1 + 42560 0.66 0.402694
Target:  5'- cGCCGAGCgggcgGGCCgGUgGGcCGAUGUg- -3'
miRNA:   3'- cUGGCUCG-----CCGGgCAgCC-GCUACGgg -5'
23193 5' -62.7 NC_005259.1 + 1165 0.66 0.402694
Target:  5'- cGACCG-GCaGCCCGgugagCGGgucgaccaauCGGUGCCg -3'
miRNA:   3'- -CUGGCuCGcCGGGCa----GCC----------GCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 14829 0.66 0.400127
Target:  5'- uACCGcaacuguugaucuuGGUGGCCC-UCaGGCGGcgGCCCu -3'
miRNA:   3'- cUGGC--------------UCGCCGGGcAG-CCGCUa-CGGG- -5'
23193 5' -62.7 NC_005259.1 + 29605 0.66 0.394178
Target:  5'- cGCUGAGCuuGGUCCaccccgaGGCGGUGCCg -3'
miRNA:   3'- cUGGCUCG--CCGGGcag----CCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 8928 0.66 0.394178
Target:  5'- aGGCuCGGGCGGCUCGcCgacuuucucgauGGCGA-GCUCg -3'
miRNA:   3'- -CUG-GCUCGCCGGGCaG------------CCGCUaCGGG- -5'
23193 5' -62.7 NC_005259.1 + 44526 0.67 0.38578
Target:  5'- cGACCgGAGa-GCUCGuccUCGGCGAUGUCa -3'
miRNA:   3'- -CUGG-CUCgcCGGGC---AGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 8883 0.67 0.38578
Target:  5'- cGACuCGAuaucgGCGGCCuCGUCcuGCGcgGCCUn -3'
miRNA:   3'- -CUG-GCU-----CGCCGG-GCAGc-CGCuaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.