miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 5' -62.7 NC_005259.1 + 39063 0.68 0.304273
Target:  5'- uGGCCGccacGCGGCCCgGUCgcggcugguggggcgGGCGGUGaCCg -3'
miRNA:   3'- -CUGGCu---CGCCGGG-CAG---------------CCGCUACgGG- -5'
23193 5' -62.7 NC_005259.1 + 6335 0.68 0.301471
Target:  5'- aGACCGAGCgaGGCCaCGaccUCGuccucgaguGCGGUGUCCc -3'
miRNA:   3'- -CUGGCUCG--CCGG-GC---AGC---------CGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 8431 0.69 0.293867
Target:  5'- uGCCGAcggucagGCGGCCCa-CGGCGAgucgggUGCCg -3'
miRNA:   3'- cUGGCU-------CGCCGGGcaGCCGCU------ACGGg -5'
23193 5' -62.7 NC_005259.1 + 34548 0.69 0.290461
Target:  5'- cGACCGGGCaGCgUGUCgcugaugagcagcuuGGUGGUGUCCc -3'
miRNA:   3'- -CUGGCUCGcCGgGCAG---------------CCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 37325 0.69 0.287758
Target:  5'- cGACgGGGuuGCCCGaggcauccUCGGCGGUGaCCa -3'
miRNA:   3'- -CUGgCUCgcCGGGC--------AGCCGCUACgGG- -5'
23193 5' -62.7 NC_005259.1 + 63277 0.69 0.283742
Target:  5'- cGCCGGacggcggccauucucGCGGCCaagCGGCGAgcUGCCUg -3'
miRNA:   3'- cUGGCU---------------CGCCGGgcaGCCGCU--ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 62547 0.69 0.281088
Target:  5'- cGCUGAuCGGCagCGUCGcCGGUGCCCu -3'
miRNA:   3'- cUGGCUcGCCGg-GCAGCcGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 49842 0.69 0.280428
Target:  5'- cGAUCaGGGUcgaGGUUCGUCGGCGcucaacgGUGCCCu -3'
miRNA:   3'- -CUGG-CUCG---CCGGGCAGCCGC-------UACGGG- -5'
23193 5' -62.7 NC_005259.1 + 10029 0.69 0.268117
Target:  5'- -gUCGGGCaGCUCGUCGGCGAcgGCg- -3'
miRNA:   3'- cuGGCUCGcCGGGCAGCCGCUa-CGgg -5'
23193 5' -62.7 NC_005259.1 + 19444 0.69 0.268117
Target:  5'- uGCCGGGCuGUUCGUCGGUcGUGgCCa -3'
miRNA:   3'- cUGGCUCGcCGGGCAGCCGcUACgGG- -5'
23193 5' -62.7 NC_005259.1 + 62624 0.69 0.268117
Target:  5'- cGCCGGGCgcgauGGUCaaCGUCauuuucgaGGCGGUGCCCu -3'
miRNA:   3'- cUGGCUCG-----CCGG--GCAG--------CCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 28327 0.69 0.264322
Target:  5'- aGCgCGAGCgccuuggugcucaccGGCCCGaugaUCGG-GGUGCCCg -3'
miRNA:   3'- cUG-GCUCG---------------CCGGGC----AGCCgCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 10391 0.7 0.255634
Target:  5'- -uUCGAGCgccuGGCUgaUGUCGGCGAaaccgacagUGCCCa -3'
miRNA:   3'- cuGGCUCG----CCGG--GCAGCCGCU---------ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 66782 0.7 0.255634
Target:  5'- cACCGAGCgcccGGCCUcgccauuuGUCGGCGAcaGCCg -3'
miRNA:   3'- cUGGCUCG----CCGGG--------CAGCCGCUa-CGGg -5'
23193 5' -62.7 NC_005259.1 + 60884 0.7 0.249573
Target:  5'- aGACCcc-CGGCCUaGUCGGCuacgGGUGCCCc -3'
miRNA:   3'- -CUGGcucGCCGGG-CAGCCG----CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 2358 0.7 0.249573
Target:  5'- cACCGcucggauuGCuGCCgGUCGGCGGUGCUg -3'
miRNA:   3'- cUGGCu-------CGcCGGgCAGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 65873 0.7 0.243631
Target:  5'- cACCGugggcAGCGgacggcaccGCCCGUgggacuacaCGGUGAUGCCCg -3'
miRNA:   3'- cUGGC-----UCGC---------CGGGCA---------GCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 7704 0.7 0.22651
Target:  5'- aACgCGAGCGGCUgaUCGGUGaAUGUCCg -3'
miRNA:   3'- cUG-GCUCGCCGGgcAGCCGC-UACGGG- -5'
23193 5' -62.7 NC_005259.1 + 19562 0.7 0.22651
Target:  5'- --gCGAGCGccGCCUugGUCGGCagccgGAUGCCCa -3'
miRNA:   3'- cugGCUCGC--CGGG--CAGCCG-----CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 54962 0.7 0.221033
Target:  5'- cAUCGAGCGGCagcgcaUCGUCGGCGAcGagaCCa -3'
miRNA:   3'- cUGGCUCGCCG------GGCAGCCGCUaCg--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.