Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 23199 | 5' | -57.4 | NC_005259.1 | + | 8076 | 0.66 | 0.662662 |
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Target: 5'- uCGAGAucGUGCCG-CGCuGGCgugACCGuGCGa -3' miRNA: 3'- cGCUCU--UACGGCuGUG-CCG---UGGC-CGU- -5' |
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| 23199 | 5' | -57.4 | NC_005259.1 | + | 28967 | 0.66 | 0.662662 |
|
Target: 5'- cCGAGGucgGUGCCGAggcCGCGaGCGCCcGCu -3' miRNA: 3'- cGCUCU---UACGGCU---GUGC-CGUGGcCGu -5' |
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| 23199 | 5' | -57.4 | NC_005259.1 | + | 54689 | 0.66 | 0.662662 |
|
Target: 5'- aGCGAGAccGUGUCGAgGCGGguggccucaGCCuGGUAc -3' miRNA: 3'- -CGCUCU--UACGGCUgUGCCg--------UGG-CCGU- -5' |
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| 23199 | 5' | -57.4 | NC_005259.1 | + | 50678 | 0.66 | 0.641371 |
|
Target: 5'- cGCGucGGUGCCGACGaGGCGCU-GCu -3' miRNA: 3'- -CGCucUUACGGCUGUgCCGUGGcCGu -5' |
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| 23199 | 5' | -57.4 | NC_005259.1 | + | 38441 | 0.66 | 0.641371 |
|
Target: 5'- uCGAGAccgaaaAUGCCGuGCGagGGCACCgagGGCAg -3' miRNA: 3'- cGCUCU------UACGGC-UGUg-CCGUGG---CCGU- -5' |
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| 23199 | 5' | -57.4 | NC_005259.1 | + | 4263 | 0.66 | 0.641371 |
|
Target: 5'- uGCGAGGAcaacgggcgGCUGcgcugccacgaGCACGG-ACCGGCGg -3' miRNA: 3'- -CGCUCUUa--------CGGC-----------UGUGCCgUGGCCGU- -5' |
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| 23199 | 5' | -57.4 | NC_005259.1 | + | 17757 | 0.66 | 0.694373 |
|
Target: 5'- cGUGAGGccGCCG-CGCGccgggccgagcGCACCGaGCGu -3' miRNA: 3'- -CGCUCUuaCGGCuGUGC-----------CGUGGC-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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