miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23200 5' -54.1 NC_005259.1 + 29902 0.66 0.854964
Target:  5'- aGCaCAAGGGguggcugcccgagacCAUCGACGcGUGgcCGCCa -3'
miRNA:   3'- -UGaGUUCCU---------------GUGGCUGC-CACauGCGG- -5'
23200 5' -54.1 NC_005259.1 + 52334 0.66 0.851648
Target:  5'- gGCUC--GGACA-CGcCGGUGUGcCGCUg -3'
miRNA:   3'- -UGAGuuCCUGUgGCuGCCACAU-GCGG- -5'
23200 5' -54.1 NC_005259.1 + 19865 0.66 0.851648
Target:  5'- cGCUCGcgcccgccGGGAuCGCCGACGcc--GCGCCc -3'
miRNA:   3'- -UGAGU--------UCCU-GUGGCUGCcacaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 19106 0.66 0.851648
Target:  5'- aACUCAccGGCGCUGgu-GUGUGCGUCg -3'
miRNA:   3'- -UGAGUucCUGUGGCugcCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 60421 0.66 0.851648
Target:  5'- uGCUCgGGGGugGCCcACGGggcgGccACGCCc -3'
miRNA:   3'- -UGAG-UUCCugUGGcUGCCa---Ca-UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 38711 0.66 0.846608
Target:  5'- gACUguAGGuugaccaccgcugccGCcguACCGGCGGUGgccCGCCg -3'
miRNA:   3'- -UGAguUCC---------------UG---UGGCUGCCACau-GCGG- -5'
23200 5' -54.1 NC_005259.1 + 17881 0.66 0.842349
Target:  5'- cGCUCGguuGGACccccgcaccgcgcGCCGAUGcGUGUggAUGCCc -3'
miRNA:   3'- -UGAGUu--CCUG-------------UGGCUGC-CACA--UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 66840 0.66 0.833669
Target:  5'- gGCUCAugccgcccgcacGGGcCACCGAuCGGccuUGUucgcaccGCGCCa -3'
miRNA:   3'- -UGAGU------------UCCuGUGGCU-GCC---ACA-------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 4151 0.66 0.825682
Target:  5'- gUUCAAGGACGCgauggucaCGAUGGUc-ACGCUg -3'
miRNA:   3'- uGAGUUCCUGUG--------GCUGCCAcaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 36911 0.66 0.825682
Target:  5'- cACUgaCGGGGAUaucguGCCGACGGUGaguguUGCUg -3'
miRNA:   3'- -UGA--GUUCCUG-----UGGCUGCCACau---GCGG- -5'
23200 5' -54.1 NC_005259.1 + 63552 0.66 0.825682
Target:  5'- uGCUCGGcGGcCACCGacgcgacgaGCGGgauaUACGCCg -3'
miRNA:   3'- -UGAGUU-CCuGUGGC---------UGCCac--AUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 44966 0.67 0.807372
Target:  5'- -gUCAucGGGAUGCCGAgggcCGGUGcgACuGCCg -3'
miRNA:   3'- ugAGU--UCCUGUGGCU----GCCACa-UG-CGG- -5'
23200 5' -54.1 NC_005259.1 + 30545 0.67 0.807372
Target:  5'- -aUCAuGGcCACCGAgCGGuUGUugACGCCc -3'
miRNA:   3'- ugAGUuCCuGUGGCU-GCC-ACA--UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 10446 0.67 0.807372
Target:  5'- -aUCGAGuGGCucgaCGGCGGUGUccuGCGCa -3'
miRNA:   3'- ugAGUUC-CUGug--GCUGCCACA---UGCGg -5'
23200 5' -54.1 NC_005259.1 + 43653 0.67 0.797945
Target:  5'- -aUCu---GCGCCGACGGUGUcguUGCCg -3'
miRNA:   3'- ugAGuuccUGUGGCUGCCACAu--GCGG- -5'
23200 5' -54.1 NC_005259.1 + 8488 0.67 0.788351
Target:  5'- cGCUguc-GGCACUGAUGGUGUGCaCCa -3'
miRNA:   3'- -UGAguucCUGUGGCUGCCACAUGcGG- -5'
23200 5' -54.1 NC_005259.1 + 15987 0.67 0.788351
Target:  5'- -gUCGAGuGAuCACCGcCGGUGgcCGCa -3'
miRNA:   3'- ugAGUUC-CU-GUGGCuGCCACauGCGg -5'
23200 5' -54.1 NC_005259.1 + 30294 0.67 0.788351
Target:  5'- aGCUCuacGGugGCCcauuaGACGGcGaGCGCCg -3'
miRNA:   3'- -UGAGuu-CCugUGG-----CUGCCaCaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 62732 0.68 0.7687
Target:  5'- cGCUCGAccGgACCGGCGGcaGUACGCg -3'
miRNA:   3'- -UGAGUUccUgUGGCUGCCa-CAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 39601 0.68 0.758665
Target:  5'- -aUCGuguGGGuggugccauCAgCGACGGUGUACGCg -3'
miRNA:   3'- ugAGU---UCCu--------GUgGCUGCCACAUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.