Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23206 | 3' | -58.5 | NC_005259.1 | + | 15568 | 0.71 | 0.342778 |
Target: 5'- ---aGGUGGCcacccucgGGgccaGCGCGACGGGCCg -3' miRNA: 3'- gcuaCCACCG--------CCa---CGCGCUGUCUGGg -5' |
|||||||
23206 | 3' | -58.5 | NC_005259.1 | + | 67162 | 0.71 | 0.32728 |
Target: 5'- uCGAUGGUGGCGGccaUGCcGCcGAUgauGCCCg -3' miRNA: 3'- -GCUACCACCGCC---ACG-CG-CUGuc-UGGG- -5' |
|||||||
23206 | 3' | -58.5 | NC_005259.1 | + | 41633 | 0.72 | 0.319728 |
Target: 5'- -cAUGGUGGCGGUGC-CGgucuGCGGGCgCu -3' miRNA: 3'- gcUACCACCGCCACGcGC----UGUCUGgG- -5' |
|||||||
23206 | 3' | -58.5 | NC_005259.1 | + | 29963 | 0.72 | 0.312307 |
Target: 5'- uGGUGGggcgGGCGGUGacCGUccaACGGACCCc -3' miRNA: 3'- gCUACCa---CCGCCAC--GCGc--UGUCUGGG- -5' |
|||||||
23206 | 3' | -58.5 | NC_005259.1 | + | 35674 | 0.73 | 0.257643 |
Target: 5'- ---cGGUGGUGGUGCacaGCGACGccguGCCCg -3' miRNA: 3'- gcuaCCACCGCCACG---CGCUGUc---UGGG- -5' |
|||||||
23206 | 3' | -58.5 | NC_005259.1 | + | 51268 | 0.74 | 0.238662 |
Target: 5'- gCGGUGGUcaCGGUGCGCGGCAaGcggcagcGCCCg -3' miRNA: 3'- -GCUACCAccGCCACGCGCUGU-C-------UGGG- -5' |
|||||||
23206 | 3' | -58.5 | NC_005259.1 | + | 65875 | 0.77 | 0.146938 |
Target: 5'- cCGGUGG-GGCGGUcaaucgGCGgGACGGuCCCg -3' miRNA: 3'- -GCUACCaCCGCCA------CGCgCUGUCuGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home