Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 20139 | 0.66 | 0.775488 |
Target: 5'- cCGUCGcgauGaCGGcAGCCG-GUGCCCugGCCa -3' miRNA: 3'- aGUAGCu---C-GCC-UUGGUaCACGGG--CGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 43950 | 0.66 | 0.775488 |
Target: 5'- gCGUCGgcgaugGGCGGGGCCGcc-GCCUGaCCg -3' miRNA: 3'- aGUAGC------UCGCCUUGGUacaCGGGC-GG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 32896 | 0.66 | 0.775488 |
Target: 5'- cCGggggCGAGgGuGAGCCAcccgGCCCGCUc -3' miRNA: 3'- aGUa---GCUCgC-CUUGGUaca-CGGGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 51938 | 0.66 | 0.765616 |
Target: 5'- cUUGUCaGGCGGGACa--GU-CCCGCCg -3' miRNA: 3'- -AGUAGcUCGCCUUGguaCAcGGGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 50276 | 0.66 | 0.755612 |
Target: 5'- gUCGUCGguGGCGGGAacgUCGUGcacGCuCUGCCa -3' miRNA: 3'- -AGUAGC--UCGCCUU---GGUACa--CG-GGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 10444 | 0.66 | 0.755612 |
Target: 5'- aCAUCGAGUGGcucgacGGCgGUGU-CCUGCg -3' miRNA: 3'- aGUAGCUCGCC------UUGgUACAcGGGCGg -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 33735 | 0.66 | 0.752587 |
Target: 5'- -uGUCGcGUGGAGCgGUGUGCacgagcacgaacacCCGCa -3' miRNA: 3'- agUAGCuCGCCUUGgUACACG--------------GGCGg -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 6657 | 0.66 | 0.735255 |
Target: 5'- -gGUCGAG-GGuguCCGUGacgcgcgagcUGCCCGCUu -3' miRNA: 3'- agUAGCUCgCCuu-GGUAC----------ACGGGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 45545 | 0.66 | 0.735255 |
Target: 5'- ---gCGAGCGGGuugcucgccggGCCAcccuUGCCCGCg -3' miRNA: 3'- aguaGCUCGCCU-----------UGGUac--ACGGGCGg -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 30353 | 0.66 | 0.724923 |
Target: 5'- cUCAcCGuGUGGAcGCCGaucUGCCCGCUg -3' miRNA: 3'- -AGUaGCuCGCCU-UGGUac-ACGGGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 13671 | 0.66 | 0.724923 |
Target: 5'- aCAUCGAcggugugcucGUGGAcCCGUG-GCCgGUCg -3' miRNA: 3'- aGUAGCU----------CGCCUuGGUACaCGGgCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 50702 | 0.67 | 0.714503 |
Target: 5'- cUCGUCGucGCGcuuGAGCCggGUGCUgGCUu -3' miRNA: 3'- -AGUAGCu-CGC---CUUGGuaCACGGgCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 65889 | 0.67 | 0.714503 |
Target: 5'- -aAUCG-GCGGGACg--GU-CCCGCCg -3' miRNA: 3'- agUAGCuCGCCUUGguaCAcGGGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 54682 | 0.67 | 0.714503 |
Target: 5'- cUCggCGAGCGaGACCGUGUcgaggcgggugGCCUcaGCCu -3' miRNA: 3'- -AGuaGCUCGCcUUGGUACA-----------CGGG--CGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 46918 | 0.67 | 0.704005 |
Target: 5'- gUCcgCGuGCGccGCCGaGcuUGCCCGCCg -3' miRNA: 3'- -AGuaGCuCGCcuUGGUaC--ACGGGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 23613 | 0.67 | 0.704005 |
Target: 5'- cCcgCGuGGCGGcAGCCAgacggcucggugUGguuucgGCCCGCCg -3' miRNA: 3'- aGuaGC-UCGCC-UUGGU------------ACa-----CGGGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 393 | 0.67 | 0.69344 |
Target: 5'- uUCAagaCGGGCGaauACCAgcagcgcGUGCCCGUCg -3' miRNA: 3'- -AGUa--GCUCGCcu-UGGUa------CACGGGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 2099 | 0.67 | 0.69344 |
Target: 5'- uUCAUCG-GCGaGGCCAauUGgcacacGCUCGCCg -3' miRNA: 3'- -AGUAGCuCGCcUUGGU--ACa-----CGGGCGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 34870 | 0.67 | 0.69344 |
Target: 5'- cUCGUCGGuGCcGGACCGggGUGCCUcgggcaggacggGCCg -3' miRNA: 3'- -AGUAGCU-CGcCUUGGUa-CACGGG------------CGG- -5' |
|||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 6396 | 0.67 | 0.682819 |
Target: 5'- gUCAuuuUCGAGgCGGuGCCcugAUGUgGCCCGaCCu -3' miRNA: 3'- -AGU---AGCUC-GCCuUGG---UACA-CGGGC-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home