miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23208 5' -55.9 NC_005259.1 + 67250 0.68 0.650718
Target:  5'- -gGUUGAGCGGGGCCucgggcagccGUGUCgCGUCa -3'
miRNA:   3'- agUAGCUCGCCUUGGua--------CACGG-GCGG- -5'
23208 5' -55.9 NC_005259.1 + 67158 0.73 0.371235
Target:  5'- cUUGUCGAugGUGGcGGCCAUGccgccgaugaUGCCCGCCu -3'
miRNA:   3'- -AGUAGCU--CGCC-UUGGUAC----------ACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 65889 0.67 0.714503
Target:  5'- -aAUCG-GCGGGACg--GU-CCCGCCg -3'
miRNA:   3'- agUAGCuCGCCUUGguaCAcGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 65155 0.73 0.338204
Target:  5'- -aGUCGAaaCGG-GCCAUG-GCCCGCCg -3'
miRNA:   3'- agUAGCUc-GCCuUGGUACaCGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 62377 0.67 0.672152
Target:  5'- cUCAUCGAGUagcaGAuCCAaaccGCCCGCCu -3'
miRNA:   3'- -AGUAGCUCGc---CUuGGUaca-CGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 57627 1.13 0.000665
Target:  5'- cUCAUCGAGCGGAACCAUGUGCCCGCCg -3'
miRNA:   3'- -AGUAGCUCGCCUUGGUACACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 57130 0.68 0.62922
Target:  5'- cCAUCG-GCGGGACCgagcaguaGUG-GCCCucccacguGCCg -3'
miRNA:   3'- aGUAGCuCGCCUUGG--------UACaCGGG--------CGG- -5'
23208 5' -55.9 NC_005259.1 + 56078 0.67 0.672152
Target:  5'- cCGUCGAGCaG-AUCG-GUGCUCGUCg -3'
miRNA:   3'- aGUAGCUCGcCuUGGUaCACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 54682 0.67 0.714503
Target:  5'- cUCggCGAGCGaGACCGUGUcgaggcgggugGCCUcaGCCu -3'
miRNA:   3'- -AGuaGCUCGCcUUGGUACA-----------CGGG--CGG- -5'
23208 5' -55.9 NC_005259.1 + 53624 0.75 0.271896
Target:  5'- gCGUCGAGCGGuGCCGU-UGgCCGCUu -3'
miRNA:   3'- aGUAGCUCGCCuUGGUAcACgGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 51938 0.66 0.765616
Target:  5'- cUUGUCaGGCGGGACa--GU-CCCGCCg -3'
miRNA:   3'- -AGUAGcUCGCCUUGguaCAcGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 50702 0.67 0.714503
Target:  5'- cUCGUCGucGCGcuuGAGCCggGUGCUgGCUu -3'
miRNA:   3'- -AGUAGCu-CGC---CUUGGuaCACGGgCGG- -5'
23208 5' -55.9 NC_005259.1 + 50276 0.66 0.755612
Target:  5'- gUCGUCGguGGCGGGAacgUCGUGcacGCuCUGCCa -3'
miRNA:   3'- -AGUAGC--UCGCCUU---GGUACa--CG-GGCGG- -5'
23208 5' -55.9 NC_005259.1 + 49084 0.71 0.443583
Target:  5'- aUCGcUCGAG-GGugUCAUGgccGCCCGCCg -3'
miRNA:   3'- -AGU-AGCUCgCCuuGGUACa--CGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 48598 0.71 0.482605
Target:  5'- cUUGUCGAGCGcGGgcgcuaccGCCGUGcgcacUGCCuCGCCg -3'
miRNA:   3'- -AGUAGCUCGC-CU--------UGGUAC-----ACGG-GCGG- -5'
23208 5' -55.9 NC_005259.1 + 46918 0.67 0.704005
Target:  5'- gUCcgCGuGCGccGCCGaGcuUGCCCGCCg -3'
miRNA:   3'- -AGuaGCuCGCcuUGGUaC--ACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 45545 0.66 0.735255
Target:  5'- ---gCGAGCGGGuugcucgccggGCCAcccuUGCCCGCg -3'
miRNA:   3'- aguaGCUCGCCU-----------UGGUac--ACGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 45090 0.68 0.639973
Target:  5'- -uGUCGAGCGugcCCGUGUaGCCgGUCg -3'
miRNA:   3'- agUAGCUCGCcuuGGUACA-CGGgCGG- -5'
23208 5' -55.9 NC_005259.1 + 43950 0.66 0.775488
Target:  5'- gCGUCGgcgaugGGCGGGGCCGcc-GCCUGaCCg -3'
miRNA:   3'- aGUAGC------UCGCCUUGGUacaCGGGC-GG- -5'
23208 5' -55.9 NC_005259.1 + 43721 0.67 0.672152
Target:  5'- gCAUCGAGUcgauGGcGGCCAUGccGCCgaGCCg -3'
miRNA:   3'- aGUAGCUCG----CC-UUGGUACa-CGGg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.