miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23209 3' -52.7 NC_005259.1 + 40671 0.66 0.916663
Target:  5'- gCAGCGcgagCGCCUUGGu--GCUCACCGg -3'
miRNA:   3'- -GUUGCa---GUGGAACUggcUGAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 58181 0.66 0.916663
Target:  5'- uCGACG-CACguCUUGACCGccguggGCUUGCCGg -3'
miRNA:   3'- -GUUGCaGUG--GAACUGGC------UGAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 12035 0.66 0.916663
Target:  5'- gGGCGgcaaccgguacUCACCgaGGCCGAgCUCugCGg -3'
miRNA:   3'- gUUGC-----------AGUGGaaCUGGCU-GAGugGCg -5'
23209 3' -52.7 NC_005259.1 + 56230 0.66 0.911015
Target:  5'- cCAGuCGUCGCCgccgaccacguuggGAUCGGCggccuugagCGCCGCc -3'
miRNA:   3'- -GUU-GCAGUGGaa------------CUGGCUGa--------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 22701 0.66 0.910374
Target:  5'- --cCGUCGCCgucACCGGCUCGaugagcuaCGCc -3'
miRNA:   3'- guuGCAGUGGaacUGGCUGAGUg-------GCG- -5'
23209 3' -52.7 NC_005259.1 + 35542 0.66 0.910374
Target:  5'- --cCGUCGCCgauccGCCcgauGACUUGCCGCc -3'
miRNA:   3'- guuGCAGUGGaac--UGG----CUGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 33906 0.66 0.910374
Target:  5'- gCGACGg-GCCgaGACCGGC-CACgGUg -3'
miRNA:   3'- -GUUGCagUGGaaCUGGCUGaGUGgCG- -5'
23209 3' -52.7 NC_005259.1 + 19643 0.66 0.910374
Target:  5'- aGACGcUCACCggcACCGcCUCgggcaGCCGCu -3'
miRNA:   3'- gUUGC-AGUGGaacUGGCuGAG-----UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 24222 0.66 0.910374
Target:  5'- aCAACGUgACCggcggGGCCGAggCAC-GCg -3'
miRNA:   3'- -GUUGCAgUGGaa---CUGGCUgaGUGgCG- -5'
23209 3' -52.7 NC_005259.1 + 2046 0.66 0.910374
Target:  5'- gGGCgGUCACCggcACCGAgaCACgGCg -3'
miRNA:   3'- gUUG-CAGUGGaacUGGCUgaGUGgCG- -5'
23209 3' -52.7 NC_005259.1 + 15289 0.66 0.903817
Target:  5'- aAGCGaucuaCACC---GCCGAcCUCGCCGCc -3'
miRNA:   3'- gUUGCa----GUGGaacUGGCU-GAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 26044 0.66 0.903817
Target:  5'- gCAGCGcCGCCggguUGGCCauGC-CGCCGCc -3'
miRNA:   3'- -GUUGCaGUGGa---ACUGGc-UGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 48401 0.66 0.903817
Target:  5'- cCGACGccCGCCg---UCGAgUCACCGCg -3'
miRNA:   3'- -GUUGCa-GUGGaacuGGCUgAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 30326 0.66 0.903817
Target:  5'- -cGCGUCguACC-UGACaCGcagcacgaGCUCACCGUg -3'
miRNA:   3'- guUGCAG--UGGaACUG-GC--------UGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 57419 0.66 0.903817
Target:  5'- ---aGUCugCUgcuACCGGCUCGCuuaCGCg -3'
miRNA:   3'- guugCAGugGAac-UGGCUGAGUG---GCG- -5'
23209 3' -52.7 NC_005259.1 + 21520 0.66 0.901797
Target:  5'- uCAACGcCugCUguagcggcgaggacUG-CCGACUCagagACCGCg -3'
miRNA:   3'- -GUUGCaGugGA--------------ACuGGCUGAG----UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 6391 0.66 0.899754
Target:  5'- uCAACGUCAuuuucgaggcggugcCCUgaugUGGcCCGAcCUCGCCGa -3'
miRNA:   3'- -GUUGCAGU---------------GGA----ACU-GGCU-GAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 62617 0.66 0.896992
Target:  5'- uGACGccgCACCgUGGCCag--CACCGCa -3'
miRNA:   3'- gUUGCa--GUGGaACUGGcugaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 47486 0.66 0.896992
Target:  5'- -cGCGUCACCgaGGCgCGGCaggaacaCGCUGCc -3'
miRNA:   3'- guUGCAGUGGaaCUG-GCUGa------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 47895 0.66 0.896992
Target:  5'- uCAGCGUCggcucguugagcGCCUUGAU-GGCgUCGCCGa -3'
miRNA:   3'- -GUUGCAG------------UGGAACUGgCUG-AGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.