miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 5' -63.7 NC_005259.1 + 45412 0.66 0.382525
Target:  5'- cGCGcugaUGGCCGCCGCcgcugccucGUAGGcCGgaucucgGUCCu -3'
miRNA:   3'- -CGC----ACCGGCGGCGu--------CGUCC-GCa------CGGG- -5'
23211 5' -63.7 NC_005259.1 + 20531 0.66 0.382525
Target:  5'- cGgGUGcGCUGcCCGCAGCGuGGUGgaucaGCaCCg -3'
miRNA:   3'- -CgCAC-CGGC-GGCGUCGU-CCGCa----CG-GG- -5'
23211 5' -63.7 NC_005259.1 + 11074 0.66 0.374282
Target:  5'- aGCGUGGaaGCCGUAcggcucgaccucGCAGGUGUuCUUg -3'
miRNA:   3'- -CGCACCggCGGCGU------------CGUCCGCAcGGG- -5'
23211 5' -63.7 NC_005259.1 + 19949 0.66 0.373465
Target:  5'- cGUGUGcGuCCGCaacgGCGGCucGGCGgugugggUGCCCg -3'
miRNA:   3'- -CGCAC-C-GGCGg---CGUCGu-CCGC-------ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 67928 0.66 0.373465
Target:  5'- cGCGUaGGUCGCgaggaugaucuugCGguGCGGGuUGUGCUg -3'
miRNA:   3'- -CGCA-CCGGCG-------------GCguCGUCC-GCACGGg -5'
23211 5' -63.7 NC_005259.1 + 18342 0.66 0.366161
Target:  5'- uCGUGGUcgaCGCCGaCGGCGacauguGGCacaUGCCCg -3'
miRNA:   3'- cGCACCG---GCGGC-GUCGU------CCGc--ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 28300 0.66 0.358161
Target:  5'- aCG-GuGCCGCCcugcGCAGCGuagaucGGUGUGCCg -3'
miRNA:   3'- cGCaC-CGGCGG----CGUCGU------CCGCACGGg -5'
23211 5' -63.7 NC_005259.1 + 57173 0.66 0.350285
Target:  5'- cGCGUccucGCCGCCGUAGUu--CG-GCCCg -3'
miRNA:   3'- -CGCAc---CGGCGGCGUCGuccGCaCGGG- -5'
23211 5' -63.7 NC_005259.1 + 57691 0.66 0.342533
Target:  5'- cCGUGGCCagGuuGC--CGGGCuUGCCCg -3'
miRNA:   3'- cGCACCGG--CggCGucGUCCGcACGGG- -5'
23211 5' -63.7 NC_005259.1 + 36491 0.67 0.334905
Target:  5'- uCGcGGUCGacggGCAGCucuGGCGUGUCCu -3'
miRNA:   3'- cGCaCCGGCgg--CGUCGu--CCGCACGGG- -5'
23211 5' -63.7 NC_005259.1 + 23615 0.67 0.33415
Target:  5'- cGCGUGGCgGCagccaGaCGGCucGGUGUgguuucgGCCCg -3'
miRNA:   3'- -CGCACCGgCGg----C-GUCGu-CCGCA-------CGGG- -5'
23211 5' -63.7 NC_005259.1 + 46921 0.67 0.327403
Target:  5'- cGCGUGcGCCGCCG-AGCu----UGCCCg -3'
miRNA:   3'- -CGCAC-CGGCGGCgUCGuccgcACGGG- -5'
23211 5' -63.7 NC_005259.1 + 202 0.67 0.320025
Target:  5'- cGCGUGGCgCGacggcaaGCAGUucGGGCaGUGCUa -3'
miRNA:   3'- -CGCACCG-GCgg-----CGUCG--UCCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 15393 0.67 0.320025
Target:  5'- cCGUGGCCG-CGCAcucccaaggguGCGcuGCGUGCCa -3'
miRNA:   3'- cGCACCGGCgGCGU-----------CGUc-CGCACGGg -5'
23211 5' -63.7 NC_005259.1 + 47960 0.67 0.320025
Target:  5'- cCGaUGGCCGCCGCGccGCccGCGaauaUGCCg -3'
miRNA:   3'- cGC-ACCGGCGGCGU--CGucCGC----ACGGg -5'
23211 5' -63.7 NC_005259.1 + 48061 0.67 0.320025
Target:  5'- gGCGgguaGcGCCGCCGCgcccugAGCGauGGUGUugaGCCCg -3'
miRNA:   3'- -CGCa---C-CGGCGGCG------UCGU--CCGCA---CGGG- -5'
23211 5' -63.7 NC_005259.1 + 60553 0.67 0.305646
Target:  5'- uCGUcGGCaugcccggUGCCGaCGGuCAGGCG-GCCCa -3'
miRNA:   3'- cGCA-CCG--------GCGGC-GUC-GUCCGCaCGGG- -5'
23211 5' -63.7 NC_005259.1 + 20128 0.67 0.305646
Target:  5'- cGCacUGGCUGCCGUcgcgaugacGGCAGcCGgUGCCCu -3'
miRNA:   3'- -CGc-ACCGGCGGCG---------UCGUCcGC-ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 55327 0.67 0.298645
Target:  5'- gGgGUGGUCuugGCgGCAGCGguGGCGaUGCCg -3'
miRNA:   3'- -CgCACCGG---CGgCGUCGU--CCGC-ACGGg -5'
23211 5' -63.7 NC_005259.1 + 43026 0.67 0.298645
Target:  5'- gGCGauGCCGCCG-AGCAGGCc-GCCg -3'
miRNA:   3'- -CGCacCGGCGGCgUCGUCCGcaCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.