miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23212 5' -58.3 NC_005259.1 + 35698 0.66 0.666288
Target:  5'- uGCCCggCGaGGGGUCGC-UGACGagguauCCGCc -3'
miRNA:   3'- -CGGGuaGC-CCCUGGCGaACUGU------GGCG- -5'
23212 5' -58.3 NC_005259.1 + 37378 0.66 0.655799
Target:  5'- cGCCC-UCGGcaccgcccgccGcGCCGCccaugguguugUUGACGCCGCc -3'
miRNA:   3'- -CGGGuAGCC-----------CcUGGCG-----------AACUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 41658 0.66 0.655799
Target:  5'- cGCUCGgugagCGGGaucugcACCGCgugcgUGGcCACCGCg -3'
miRNA:   3'- -CGGGUa----GCCCc-----UGGCGa----ACU-GUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 57264 0.66 0.64529
Target:  5'- aGUCCGUUGGGcgagggauuGACCGg-UGGCACCu- -3'
miRNA:   3'- -CGGGUAGCCC---------CUGGCgaACUGUGGcg -5'
23212 5' -58.3 NC_005259.1 + 55885 0.66 0.64529
Target:  5'- cGCCCcgaccUCGGGGGUCGCgccggggucgcUGGCcagACCGCu -3'
miRNA:   3'- -CGGGu----AGCCCCUGGCGa----------ACUG---UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 11422 0.66 0.64529
Target:  5'- gGCCgGUgcaaCGGGGA-UGCUUGG-GCCGCu -3'
miRNA:   3'- -CGGgUA----GCCCCUgGCGAACUgUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 5255 0.66 0.642135
Target:  5'- gGCUCggCGGGGAcuacggucagugucCCGUcgUUGACAUCGa -3'
miRNA:   3'- -CGGGuaGCCCCU--------------GGCG--AACUGUGGCg -5'
23212 5' -58.3 NC_005259.1 + 14238 0.66 0.635822
Target:  5'- uGCgUAUCGGGccgggcaacgacGACCGUgucgucaccccgucGACACCGCc -3'
miRNA:   3'- -CGgGUAGCCC------------CUGGCGaa------------CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 58978 0.66 0.63477
Target:  5'- aGCUCGUCGGcGACggcgaGCUUGGCcuuuucACCGUu -3'
miRNA:   3'- -CGGGUAGCCcCUGg----CGAACUG------UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 23213 0.66 0.63477
Target:  5'- gGCCCAaggaCGGGuaccguCCGCUcGACGCCa- -3'
miRNA:   3'- -CGGGUa---GCCCcu----GGCGAaCUGUGGcg -5'
23212 5' -58.3 NC_005259.1 + 12173 0.66 0.628456
Target:  5'- cGCCC-UCGGucgaaccugccGGACCGUggucgUGuagagaugcaccggcGCACCGCc -3'
miRNA:   3'- -CGGGuAGCC-----------CCUGGCGa----AC---------------UGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 62162 0.66 0.624248
Target:  5'- aGCaCC-UCGGGGugCGCgaucucGACACguucgucaCGCa -3'
miRNA:   3'- -CG-GGuAGCCCCugGCGaa----CUGUG--------GCG- -5'
23212 5' -58.3 NC_005259.1 + 35457 0.66 0.624248
Target:  5'- cGCCCAcCGGc-ACCGCca-GCACCGCc -3'
miRNA:   3'- -CGGGUaGCCccUGGCGaacUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 13411 0.66 0.624248
Target:  5'- gGCCUuccuggcCGGGGucGCCGCc-GGgGCCGCg -3'
miRNA:   3'- -CGGGua-----GCCCC--UGGCGaaCUgUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 51490 0.66 0.624248
Target:  5'- -aCCGcCGGGGAuaGgUcGACGCCGCc -3'
miRNA:   3'- cgGGUaGCCCCUggCgAaCUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 6486 0.66 0.617937
Target:  5'- cGCUCAcgCGGGuACUGCUggcccacaucgaccGACGCCGUg -3'
miRNA:   3'- -CGGGUa-GCCCcUGGCGAa-------------CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 45624 0.66 0.617937
Target:  5'- uGCCCGcCGGgccgggcagcgcgccGGuGCCGCcgUGAaCACCGCc -3'
miRNA:   3'- -CGGGUaGCC---------------CC-UGGCGa-ACU-GUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 60432 0.67 0.603231
Target:  5'- gGCCCA-CGGGGcgGCCacGCccGACACCu- -3'
miRNA:   3'- -CGGGUaGCCCC--UGG--CGaaCUGUGGcg -5'
23212 5' -58.3 NC_005259.1 + 66017 0.67 0.592752
Target:  5'- aCCC-UCGGGG-CCGCacgUGuuGCgCGCg -3'
miRNA:   3'- cGGGuAGCCCCuGGCGa--ACugUG-GCG- -5'
23212 5' -58.3 NC_005259.1 + 6204 0.67 0.592752
Target:  5'- aGCgUgagCGGGGugagccGCCGCgccGACACCGUg -3'
miRNA:   3'- -CGgGua-GCCCC------UGGCGaa-CUGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.