Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 35698 | 0.66 | 0.666288 |
Target: 5'- uGCCCggCGaGGGGUCGC-UGACGagguauCCGCc -3' miRNA: 3'- -CGGGuaGC-CCCUGGCGaACUGU------GGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 37378 | 0.66 | 0.655799 |
Target: 5'- cGCCC-UCGGcaccgcccgccGcGCCGCccaugguguugUUGACGCCGCc -3' miRNA: 3'- -CGGGuAGCC-----------CcUGGCG-----------AACUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 41658 | 0.66 | 0.655799 |
Target: 5'- cGCUCGgugagCGGGaucugcACCGCgugcgUGGcCACCGCg -3' miRNA: 3'- -CGGGUa----GCCCc-----UGGCGa----ACU-GUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 55885 | 0.66 | 0.64529 |
Target: 5'- cGCCCcgaccUCGGGGGUCGCgccggggucgcUGGCcagACCGCu -3' miRNA: 3'- -CGGGu----AGCCCCUGGCGa----------ACUG---UGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 57264 | 0.66 | 0.64529 |
Target: 5'- aGUCCGUUGGGcgagggauuGACCGg-UGGCACCu- -3' miRNA: 3'- -CGGGUAGCCC---------CUGGCgaACUGUGGcg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 11422 | 0.66 | 0.64529 |
Target: 5'- gGCCgGUgcaaCGGGGA-UGCUUGG-GCCGCu -3' miRNA: 3'- -CGGgUA----GCCCCUgGCGAACUgUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 5255 | 0.66 | 0.642135 |
Target: 5'- gGCUCggCGGGGAcuacggucagugucCCGUcgUUGACAUCGa -3' miRNA: 3'- -CGGGuaGCCCCU--------------GGCG--AACUGUGGCg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 14238 | 0.66 | 0.635822 |
Target: 5'- uGCgUAUCGGGccgggcaacgacGACCGUgucgucaccccgucGACACCGCc -3' miRNA: 3'- -CGgGUAGCCC------------CUGGCGaa------------CUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 23213 | 0.66 | 0.63477 |
Target: 5'- gGCCCAaggaCGGGuaccguCCGCUcGACGCCa- -3' miRNA: 3'- -CGGGUa---GCCCcu----GGCGAaCUGUGGcg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 58978 | 0.66 | 0.63477 |
Target: 5'- aGCUCGUCGGcGACggcgaGCUUGGCcuuuucACCGUu -3' miRNA: 3'- -CGGGUAGCCcCUGg----CGAACUG------UGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 12173 | 0.66 | 0.628456 |
Target: 5'- cGCCC-UCGGucgaaccugccGGACCGUggucgUGuagagaugcaccggcGCACCGCc -3' miRNA: 3'- -CGGGuAGCC-----------CCUGGCGa----AC---------------UGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 51490 | 0.66 | 0.624248 |
Target: 5'- -aCCGcCGGGGAuaGgUcGACGCCGCc -3' miRNA: 3'- cgGGUaGCCCCUggCgAaCUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 35457 | 0.66 | 0.624248 |
Target: 5'- cGCCCAcCGGc-ACCGCca-GCACCGCc -3' miRNA: 3'- -CGGGUaGCCccUGGCGaacUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 13411 | 0.66 | 0.624248 |
Target: 5'- gGCCUuccuggcCGGGGucGCCGCc-GGgGCCGCg -3' miRNA: 3'- -CGGGua-----GCCCC--UGGCGaaCUgUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 62162 | 0.66 | 0.624248 |
Target: 5'- aGCaCC-UCGGGGugCGCgaucucGACACguucgucaCGCa -3' miRNA: 3'- -CG-GGuAGCCCCugGCGaa----CUGUG--------GCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 6486 | 0.66 | 0.617937 |
Target: 5'- cGCUCAcgCGGGuACUGCUggcccacaucgaccGACGCCGUg -3' miRNA: 3'- -CGGGUa-GCCCcUGGCGAa-------------CUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 45624 | 0.66 | 0.617937 |
Target: 5'- uGCCCGcCGGgccgggcagcgcgccGGuGCCGCcgUGAaCACCGCc -3' miRNA: 3'- -CGGGUaGCC---------------CC-UGGCGa-ACU-GUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 60432 | 0.67 | 0.603231 |
Target: 5'- gGCCCA-CGGGGcgGCCacGCccGACACCu- -3' miRNA: 3'- -CGGGUaGCCCC--UGG--CGaaCUGUGGcg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 6204 | 0.67 | 0.592752 |
Target: 5'- aGCgUgagCGGGGugagccGCCGCgccGACACCGUg -3' miRNA: 3'- -CGgGua-GCCCC------UGGCGaa-CUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 66017 | 0.67 | 0.592752 |
Target: 5'- aCCC-UCGGGG-CCGCacgUGuuGCgCGCg -3' miRNA: 3'- cGGGuAGCCCCuGGCGa--ACugUG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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