miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 5' -51.8 NC_005259.1 + 27561 0.68 0.835433
Target:  5'- gGCCaCCGAUCCAuACCg-GCgggAUGCc -3'
miRNA:   3'- -CGGcGGCUGGGUuUGGaaCGaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 63866 0.68 0.817067
Target:  5'- gGUgGCCGGCU--GGCCUUGCguggGCg -3'
miRNA:   3'- -CGgCGGCUGGguUUGGAACGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 24136 0.69 0.807582
Target:  5'- cGCCGCCG-CCCugcucGCCgagUUGCgcgAUGUc -3'
miRNA:   3'- -CGGCGGCuGGGuu---UGG---AACGaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 52370 0.69 0.807582
Target:  5'- aUCGCCGACUCAAGCg--GCUgc-GCa -3'
miRNA:   3'- cGGCGGCUGGGUUUGgaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 37216 0.69 0.807582
Target:  5'- cGCCGCCGccGCCgGGGCgCUgGCccGUGCc -3'
miRNA:   3'- -CGGCGGC--UGGgUUUG-GAaCGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 52920 0.69 0.797909
Target:  5'- aCCGCCGACUCGAugGCCUggucGCUcaacGCc -3'
miRNA:   3'- cGGCGGCUGGGUU--UGGAa---CGAaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 26970 0.69 0.797909
Target:  5'- -gCGCCGugCCGAACUcgGCg-GUGUa -3'
miRNA:   3'- cgGCGGCugGGUUUGGaaCGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 48183 0.69 0.797909
Target:  5'- cGCCGCCggGugUCGGACCggGC--AUGCc -3'
miRNA:   3'- -CGGCGG--CugGGUUUGGaaCGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 18666 0.69 0.788059
Target:  5'- uGCCGCCG-CCCGAguACgUcaucgagggucUGCUUGaGCa -3'
miRNA:   3'- -CGGCGGCuGGGUU--UGgA-----------ACGAAUaCG- -5'
23217 5' -51.8 NC_005259.1 + 26143 0.69 0.788059
Target:  5'- cGCCGCCGaggccgagcaGCCCGAaaauGCCc-GCguccUGUGCg -3'
miRNA:   3'- -CGGCGGC----------UGGGUU----UGGaaCGa---AUACG- -5'
23217 5' -51.8 NC_005259.1 + 8065 0.69 0.778044
Target:  5'- cGCCGCCGACaUCGAgaucguGCCgcGCUg--GCg -3'
miRNA:   3'- -CGGCGGCUG-GGUU------UGGaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 12291 0.7 0.757564
Target:  5'- cGCCGCCGcGCCuCGAugCggGCaaugucgGUGCg -3'
miRNA:   3'- -CGGCGGC-UGG-GUUugGaaCGaa-----UACG- -5'
23217 5' -51.8 NC_005259.1 + 53392 0.7 0.757564
Target:  5'- cGCC-CCGGCCCAaaagGACCgggGCgguucUGCg -3'
miRNA:   3'- -CGGcGGCUGGGU----UUGGaa-CGaau--ACG- -5'
23217 5' -51.8 NC_005259.1 + 23673 0.7 0.757564
Target:  5'- aCCGCCGACCCcGAGCag-GCgcacGCa -3'
miRNA:   3'- cGGCGGCUGGG-UUUGgaaCGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 43293 0.7 0.757564
Target:  5'- cGCCGCCGACgCGcccGCCUgaaugGCUgcguugGCc -3'
miRNA:   3'- -CGGCGGCUGgGUu--UGGAa----CGAaua---CG- -5'
23217 5' -51.8 NC_005259.1 + 46978 0.7 0.73656
Target:  5'- cGCCGCCGAUgaUCGGGCCgagggUGCgccacGCg -3'
miRNA:   3'- -CGGCGGCUG--GGUUUGGa----ACGaaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 16431 0.7 0.73656
Target:  5'- cGUCGagCGGCCCAAACCggGCaccgUcgGCa -3'
miRNA:   3'- -CGGCg-GCUGGGUUUGGaaCGa---AuaCG- -5'
23217 5' -51.8 NC_005259.1 + 9551 0.7 0.73656
Target:  5'- aGCUGcCCGGCCUcGACCgcgucgGCgagGUGCu -3'
miRNA:   3'- -CGGC-GGCUGGGuUUGGaa----CGaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 67773 0.7 0.73656
Target:  5'- gGCCaCCGACCaCGcgguGACCUUGUUg--GCa -3'
miRNA:   3'- -CGGcGGCUGG-GU----UUGGAACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 56238 0.7 0.715128
Target:  5'- cGCCGCCGACCaCGuugggaucggcGGCCUUGa----GCg -3'
miRNA:   3'- -CGGCGGCUGG-GU-----------UUGGAACgaauaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.