Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23219 | 3' | -54.7 | NC_005259.1 | + | 68697 | 0.71 | 0.543755 |
Target: 5'- -uGAUCGAGGCGGGCAG-CGCgUCGGu -3' miRNA: 3'- auUUGGCUCUGUCUGUUgGCGgGGCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 33986 | 0.7 | 0.554335 |
Target: 5'- cUGAGCCGGGuauGCGGugAGCUGCaaCCGGc -3' miRNA: 3'- -AUUUGGCUC---UGUCugUUGGCGg-GGCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 9100 | 0.7 | 0.554335 |
Target: 5'- --cGCCGAgGGCGGGgAACucaaucccacgCGCCCCGGu -3' miRNA: 3'- auuUGGCU-CUGUCUgUUG-----------GCGGGGCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 52458 | 0.7 | 0.564974 |
Target: 5'- -cGGCgGAuGGCAGACcACCGCCCgCGa -3' miRNA: 3'- auUUGgCU-CUGUCUGuUGGCGGG-GCc -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 20455 | 0.7 | 0.564974 |
Target: 5'- cGAGCCGGGGuggcuCGGAUGACCGCCgUCGa -3' miRNA: 3'- aUUUGGCUCU-----GUCUGUUGGCGG-GGCc -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 27475 | 0.7 | 0.575666 |
Target: 5'- gGGGCCGGGGuCGGugugGCcACCGCCCCa- -3' miRNA: 3'- aUUUGGCUCU-GUC----UGuUGGCGGGGcc -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 1850 | 0.7 | 0.586403 |
Target: 5'- --cGCCGAGGCcgAGAaAGCCGCCgCCGc -3' miRNA: 3'- auuUGGCUCUG--UCUgUUGGCGG-GGCc -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 6521 | 0.69 | 0.618804 |
Target: 5'- --cGCCGuGcGCGcGACAACCGgCCUCGGg -3' miRNA: 3'- auuUGGCuC-UGU-CUGUUGGC-GGGGCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 6109 | 0.69 | 0.629638 |
Target: 5'- --cGCCGAGGCcgAGGCcGCCGCUacgCGGg -3' miRNA: 3'- auuUGGCUCUG--UCUGuUGGCGGg--GCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 40665 | 0.69 | 0.651305 |
Target: 5'- --cGCCGAG-CAGcGCGAgCGCCuuGGu -3' miRNA: 3'- auuUGGCUCuGUC-UGUUgGCGGggCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 45628 | 0.69 | 0.651305 |
Target: 5'- --cGCCGGGcCGGGCAG-CGCgCCGGu -3' miRNA: 3'- auuUGGCUCuGUCUGUUgGCGgGGCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 34539 | 0.69 | 0.662117 |
Target: 5'- --cACCGAGGCAGccuCAGCUuGCCgUCGGg -3' miRNA: 3'- auuUGGCUCUGUCu--GUUGG-CGG-GGCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 34881 | 0.68 | 0.68365 |
Target: 5'- cGGACCGGGGugccuCGGGCAggacggGCCGCUCgGGc -3' miRNA: 3'- aUUUGGCUCU-----GUCUGU------UGGCGGGgCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 45405 | 0.68 | 0.69435 |
Target: 5'- --cGCCGAGcgcGCuGAUGGCCGCCgCCGc -3' miRNA: 3'- auuUGGCUC---UGuCUGUUGGCGG-GGCc -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 24115 | 0.68 | 0.704992 |
Target: 5'- gGGACCGGGcGgGGACuacACCGCCgCCGc -3' miRNA: 3'- aUUUGGCUC-UgUCUGu--UGGCGG-GGCc -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 31236 | 0.68 | 0.704992 |
Target: 5'- gAGACCauuGGGCGcGGCGguGCCGCCCCa- -3' miRNA: 3'- aUUUGGc--UCUGU-CUGU--UGGCGGGGcc -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 19656 | 0.68 | 0.715565 |
Target: 5'- --cACCGccuCGGGCAGCCGCuacaucCCCGGu -3' miRNA: 3'- auuUGGCucuGUCUGUUGGCG------GGGCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 44995 | 0.68 | 0.722919 |
Target: 5'- --uGCCGAGGCaccgccgaccgccgGGGCcgcGCCGCCCUGc -3' miRNA: 3'- auuUGGCUCUG--------------UCUGu--UGGCGGGGCc -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 34273 | 0.68 | 0.726058 |
Target: 5'- -cAGCCG-GAUcgaugAGugGAUCGCCCuCGGg -3' miRNA: 3'- auUUGGCuCUG-----UCugUUGGCGGG-GCC- -5' |
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23219 | 3' | -54.7 | NC_005259.1 | + | 48435 | 0.67 | 0.740593 |
Target: 5'- --cACCGAGGCgcgAGGCAgcggcagcgcguuccACCGCgCgCCGGg -3' miRNA: 3'- auuUGGCUCUG---UCUGU---------------UGGCG-G-GGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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