Results 41 - 60 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 60809 | 0.72 | 0.214746 |
Target: 5'- cCCGAGGCCGGaaaucgucggcgaugCUgGCCACCaUCGCg -3' miRNA: 3'- cGGCUCCGGCUa--------------GAgCGGUGGcGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 46664 | 0.72 | 0.213686 |
Target: 5'- gGuuGAGGUucucggCGAgCUCggccugaGCCGCCGCCGCg -3' miRNA: 3'- -CggCUCCG------GCUaGAG-------CGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 9206 | 0.72 | 0.208974 |
Target: 5'- -aCGGGGCCGGa-UCGagCACCGCUGCg -3' miRNA: 3'- cgGCUCCGGCUagAGCg-GUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 14299 | 0.72 | 0.193423 |
Target: 5'- aCCGAugucggugcguauGGCCGccCUCGaCGCCGCCGCc -3' miRNA: 3'- cGGCU-------------CCGGCuaGAGCgGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 62129 | 0.72 | 0.193909 |
Target: 5'- aCCGAGGUgauCG-UCUCGaCCACCucagGCCGCa -3' miRNA: 3'- cGGCUCCG---GCuAGAGC-GGUGG----CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 51993 | 0.72 | 0.198326 |
Target: 5'- aCCGAcGCCGAUCUCGaccggaUgcacgagcgucagGCCGCCGCa -3' miRNA: 3'- cGGCUcCGGCUAGAGCg-----G-------------UGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 56887 | 0.72 | 0.203843 |
Target: 5'- aGCCGAccGCCaAUCgcagCGUgGCCGCCGCa -3' miRNA: 3'- -CGGCUc-CGGcUAGa---GCGgUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 48121 | 0.72 | 0.203843 |
Target: 5'- aCCGAGcacaCCGc-CUCGaCCACCGCCGCc -3' miRNA: 3'- cGGCUCc---GGCuaGAGC-GGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5532 | 0.72 | 0.208974 |
Target: 5'- aGCUGuGGCUGcUCUCGCCcgagGCCGCg -3' miRNA: 3'- -CGGCuCCGGCuAGAGCGGugg-CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 46532 | 0.72 | 0.208974 |
Target: 5'- gGUCGGGgaucGCCGAgaUCUgGUCGCCGaCCGCg -3' miRNA: 3'- -CGGCUC----CGGCU--AGAgCGGUGGC-GGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 45468 | 0.71 | 0.23062 |
Target: 5'- uGCCGAacgGGCCGAgcuUCUgGCCGCUgguggccuugGUCGCu -3' miRNA: 3'- -CGGCU---CCGGCU---AGAgCGGUGG----------CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 60200 | 0.71 | 0.23062 |
Target: 5'- aCCGGGccacgaucucGCCGAUCUCGUCGgCGCUGa -3' miRNA: 3'- cGGCUC----------CGGCUAGAGCGGUgGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 44976 | 0.71 | 0.23062 |
Target: 5'- uGCCGAgGGCCGGUgCgacUGCCgaggcACCGCCGa -3' miRNA: 3'- -CGGCU-CCGGCUA-Ga--GCGG-----UGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 43829 | 0.71 | 0.23062 |
Target: 5'- cGCCGgacacaGGGCCGccgCUCGCCauGCCGagCGCa -3' miRNA: 3'- -CGGC------UCCGGCua-GAGCGG--UGGCg-GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 29275 | 0.71 | 0.23062 |
Target: 5'- cGCCGuGGaCGAgaUCGCCAacCCGUCGCa -3' miRNA: 3'- -CGGCuCCgGCUagAGCGGU--GGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 9998 | 0.71 | 0.23062 |
Target: 5'- aGCCGGGGacugauccgcgUCGAUCUCGCCcuuACCGaCCa- -3' miRNA: 3'- -CGGCUCC-----------GGCUAGAGCGG---UGGC-GGcg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 11818 | 0.71 | 0.23062 |
Target: 5'- aGCuCGucGCUG-UCguacUGCCACCGCCGCa -3' miRNA: 3'- -CG-GCucCGGCuAGa---GCGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 35624 | 0.71 | 0.225037 |
Target: 5'- cGUCGAguaguucgGGCCGc---CGCCGCUGCCGCu -3' miRNA: 3'- -CGGCU--------CCGGCuagaGCGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 26095 | 0.71 | 0.225037 |
Target: 5'- cGCCGAGaagacccCCGAgcagacCGCCGCCGCCGg -3' miRNA: 3'- -CGGCUCc------GGCUaga---GCGGUGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 48521 | 0.71 | 0.23062 |
Target: 5'- uGCCGcacuGCCGAcuUCUCGgCGCUGUCGCc -3' miRNA: 3'- -CGGCuc--CGGCU--AGAGCgGUGGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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