miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 6934 0.66 0.490189
Target:  5'- cGcCGCCUUGAgGCcgaGCUCGCCgcCGacGGCa -3'
miRNA:   3'- aC-GUGGAGCUgCG---CGAGCGGa-GC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 65987 0.66 0.490189
Target:  5'- cGCGCCgagcagccgcUCGACGUGgUgCGCaccCUCGGGg -3'
miRNA:   3'- aCGUGG----------AGCUGCGCgA-GCG---GAGCCCg -5'
23225 5' -61.4 NC_005259.1 + 2630 0.66 0.490189
Target:  5'- cGCACCUCGcCGaacaaggGCggUGUCgCGGGCa -3'
miRNA:   3'- aCGUGGAGCuGCg------CGa-GCGGaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 46769 0.66 0.48055
Target:  5'- cUGCGCCgacaGcCGCGCcCGCC--GGGCc -3'
miRNA:   3'- -ACGUGGag--CuGCGCGaGCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 3313 0.66 0.48055
Target:  5'- aGCGCUgcgUCGACGUGagCGCC--GGGCa -3'
miRNA:   3'- aCGUGG---AGCUGCGCgaGCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 16635 0.66 0.479591
Target:  5'- gGcCACCUaCGGCGaCGC-CGCCgacaauuUCGGGg -3'
miRNA:   3'- aC-GUGGA-GCUGC-GCGaGCGG-------AGCCCg -5'
23225 5' -61.4 NC_005259.1 + 20246 0.66 0.471005
Target:  5'- cGCACCcugugCGACaCGC-CGCgC-CGGGCc -3'
miRNA:   3'- aCGUGGa----GCUGcGCGaGCG-GaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 66973 0.66 0.452209
Target:  5'- cGCGCCUCGcggugaauCGCGUUguaCGCCUCacGCa -3'
miRNA:   3'- aCGUGGAGCu-------GCGCGA---GCGGAGccCG- -5'
23225 5' -61.4 NC_005259.1 + 51778 0.66 0.452209
Target:  5'- aGCGCCUUGAgguauucgGCGCUCGg--CGGGUc -3'
miRNA:   3'- aCGUGGAGCUg-------CGCGAGCggaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 30149 0.66 0.452209
Target:  5'- gGCAgCUCGAcCGgGC-CGCCUaCaGGCc -3'
miRNA:   3'- aCGUgGAGCU-GCgCGaGCGGA-GcCCG- -5'
23225 5' -61.4 NC_005259.1 + 29916 0.66 0.452209
Target:  5'- cUGCccgagACCaUCGACGCGUggcCGCCaCGcGGCc -3'
miRNA:   3'- -ACG-----UGG-AGCUGCGCGa--GCGGaGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 12212 0.67 0.433831
Target:  5'- aUGCACCggCGcAC-CGCcCGCUggcCGGGCa -3'
miRNA:   3'- -ACGUGGa-GC-UGcGCGaGCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 17595 0.67 0.433831
Target:  5'- cGCaACCUCGGCGCGa-UGaCgUgGGGCg -3'
miRNA:   3'- aCG-UGGAGCUGCGCgaGC-GgAgCCCG- -5'
23225 5' -61.4 NC_005259.1 + 502 0.67 0.433831
Target:  5'- cGCugCUCGACggcauguucgauGCGCagUCGgaCUaCGGGCa -3'
miRNA:   3'- aCGugGAGCUG------------CGCG--AGCg-GA-GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 41394 0.67 0.433831
Target:  5'- gGUACCcaUGGCGCGC-CGC-UCGGGg -3'
miRNA:   3'- aCGUGGa-GCUGCGCGaGCGgAGCCCg -5'
23225 5' -61.4 NC_005259.1 + 7861 0.67 0.424805
Target:  5'- cGCGCCgaccccggUGGCccgaGUGCUUGgaCUCGGGCa -3'
miRNA:   3'- aCGUGGa-------GCUG----CGCGAGCg-GAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 10558 0.67 0.424805
Target:  5'- aUGUG-CUCGAucaauCGCGC-CGCCUCGacGGCg -3'
miRNA:   3'- -ACGUgGAGCU-----GCGCGaGCGGAGC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 53339 0.67 0.423909
Target:  5'- -uCACCUaCGAuuacguuCGCGCcCGCCUCGacGGCu -3'
miRNA:   3'- acGUGGA-GCU-------GCGCGaGCGGAGC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 16494 0.67 0.415893
Target:  5'- cGCACC-CG-CGCGCaUgGCCgagagCGaGGCg -3'
miRNA:   3'- aCGUGGaGCuGCGCG-AgCGGa----GC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 41130 0.67 0.415893
Target:  5'- gGUGCCcgCGuCGCGCa-GCCUCaGGCc -3'
miRNA:   3'- aCGUGGa-GCuGCGCGagCGGAGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.