Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23225 | 5' | -61.4 | NC_005259.1 | + | 2630 | 0.66 | 0.490189 |
Target: 5'- cGCACCUCGcCGaacaaggGCggUGUCgCGGGCa -3' miRNA: 3'- aCGUGGAGCuGCg------CGa-GCGGaGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 65987 | 0.66 | 0.490189 |
Target: 5'- cGCGCCgagcagccgcUCGACGUGgUgCGCaccCUCGGGg -3' miRNA: 3'- aCGUGG----------AGCUGCGCgA-GCG---GAGCCCg -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 6934 | 0.66 | 0.490189 |
Target: 5'- cGcCGCCUUGAgGCcgaGCUCGCCgcCGacGGCa -3' miRNA: 3'- aC-GUGGAGCUgCG---CGAGCGGa-GC--CCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 3313 | 0.66 | 0.48055 |
Target: 5'- aGCGCUgcgUCGACGUGagCGCC--GGGCa -3' miRNA: 3'- aCGUGG---AGCUGCGCgaGCGGagCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 46769 | 0.66 | 0.48055 |
Target: 5'- cUGCGCCgacaGcCGCGCcCGCC--GGGCc -3' miRNA: 3'- -ACGUGGag--CuGCGCGaGCGGagCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 16635 | 0.66 | 0.479591 |
Target: 5'- gGcCACCUaCGGCGaCGC-CGCCgacaauuUCGGGg -3' miRNA: 3'- aC-GUGGA-GCUGC-GCGaGCGG-------AGCCCg -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 20246 | 0.66 | 0.471005 |
Target: 5'- cGCACCcugugCGACaCGC-CGCgC-CGGGCc -3' miRNA: 3'- aCGUGGa----GCUGcGCGaGCG-GaGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 51778 | 0.66 | 0.452209 |
Target: 5'- aGCGCCUUGAgguauucgGCGCUCGg--CGGGUc -3' miRNA: 3'- aCGUGGAGCUg-------CGCGAGCggaGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 66973 | 0.66 | 0.452209 |
Target: 5'- cGCGCCUCGcggugaauCGCGUUguaCGCCUCacGCa -3' miRNA: 3'- aCGUGGAGCu-------GCGCGA---GCGGAGccCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 30149 | 0.66 | 0.452209 |
Target: 5'- gGCAgCUCGAcCGgGC-CGCCUaCaGGCc -3' miRNA: 3'- aCGUgGAGCU-GCgCGaGCGGA-GcCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 29916 | 0.66 | 0.452209 |
Target: 5'- cUGCccgagACCaUCGACGCGUggcCGCCaCGcGGCc -3' miRNA: 3'- -ACG-----UGG-AGCUGCGCGa--GCGGaGC-CCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 41394 | 0.67 | 0.433831 |
Target: 5'- gGUACCcaUGGCGCGC-CGC-UCGGGg -3' miRNA: 3'- aCGUGGa-GCUGCGCGaGCGgAGCCCg -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 12212 | 0.67 | 0.433831 |
Target: 5'- aUGCACCggCGcAC-CGCcCGCUggcCGGGCa -3' miRNA: 3'- -ACGUGGa-GC-UGcGCGaGCGGa--GCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 17595 | 0.67 | 0.433831 |
Target: 5'- cGCaACCUCGGCGCGa-UGaCgUgGGGCg -3' miRNA: 3'- aCG-UGGAGCUGCGCgaGC-GgAgCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 502 | 0.67 | 0.433831 |
Target: 5'- cGCugCUCGACggcauguucgauGCGCagUCGgaCUaCGGGCa -3' miRNA: 3'- aCGugGAGCUG------------CGCG--AGCg-GA-GCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 10558 | 0.67 | 0.424805 |
Target: 5'- aUGUG-CUCGAucaauCGCGC-CGCCUCGacGGCg -3' miRNA: 3'- -ACGUgGAGCU-----GCGCGaGCGGAGC--CCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 7861 | 0.67 | 0.424805 |
Target: 5'- cGCGCCgaccccggUGGCccgaGUGCUUGgaCUCGGGCa -3' miRNA: 3'- aCGUGGa-------GCUG----CGCGAGCg-GAGCCCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 53339 | 0.67 | 0.423909 |
Target: 5'- -uCACCUaCGAuuacguuCGCGCcCGCCUCGacGGCu -3' miRNA: 3'- acGUGGA-GCU-------GCGCGaGCGGAGC--CCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 16494 | 0.67 | 0.415893 |
Target: 5'- cGCACC-CG-CGCGCaUgGCCgagagCGaGGCg -3' miRNA: 3'- aCGUGGaGCuGCGCG-AgCGGa----GC-CCG- -5' |
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23225 | 5' | -61.4 | NC_005259.1 | + | 41130 | 0.67 | 0.415893 |
Target: 5'- gGUGCCcgCGuCGCGCa-GCCUCaGGCc -3' miRNA: 3'- aCGUGGa-GCuGCGCGagCGGAGcCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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