miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 43091 0.66 0.909997
Target:  5'- uGCCGCCGaacagucccgUGGUcAgGUCuGGCAGCaGCg -3'
miRNA:   3'- -CGGUGGCa---------GCCAaUgUAG-CCGUUG-CG- -5'
23228 5' -52.9 NC_005259.1 + 60379 0.66 0.909997
Target:  5'- cGCCaAUCGcCGG--ACAgCGGCGAgGCg -3'
miRNA:   3'- -CGG-UGGCaGCCaaUGUaGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 52046 0.66 0.909997
Target:  5'- uGUCGCCGUCGa--GgAUCG-CGACGCc -3'
miRNA:   3'- -CGGUGGCAGCcaaUgUAGCcGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 35666 0.66 0.909997
Target:  5'- gGCCAgCG-CGGUgguggUGCA-CaGCGACGCc -3'
miRNA:   3'- -CGGUgGCaGCCA-----AUGUaGcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 60798 0.66 0.909354
Target:  5'- aGCCGcguacacCCGaggcCGGaaauCGUCGGCGAUGCu -3'
miRNA:   3'- -CGGU-------GGCa---GCCaau-GUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 31379 0.66 0.909354
Target:  5'- cGUC-CCGUagcacccCGGUgACAUCGGagcaCAGCGCc -3'
miRNA:   3'- -CGGuGGCA-------GCCAaUGUAGCC----GUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 32389 0.66 0.903452
Target:  5'- cCCGCCGUCGcg-AUAgcUCGGCucacACGUa -3'
miRNA:   3'- cGGUGGCAGCcaaUGU--AGCCGu---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 37660 0.66 0.903452
Target:  5'- cGCCGCCGcCGGUgccGCcacgGUUGGUGuaugugcccGCGCc -3'
miRNA:   3'- -CGGUGGCaGCCAa--UG----UAGCCGU---------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 61392 0.66 0.903452
Target:  5'- cGCCcgauGCCGUCGGUguccucgcggGCA-CGGaCAACa- -3'
miRNA:   3'- -CGG----UGGCAGCCAa---------UGUaGCC-GUUGcg -5'
23228 5' -52.9 NC_005259.1 + 12679 0.66 0.903452
Target:  5'- -aCACCGUCGGaugACGagGGagaGugGCu -3'
miRNA:   3'- cgGUGGCAGCCaa-UGUagCCg--UugCG- -5'
23228 5' -52.9 NC_005259.1 + 56375 0.66 0.903452
Target:  5'- aGCCGUCG-CGGgccGCGUCGGCugauCGUc -3'
miRNA:   3'- -CGGUGGCaGCCaa-UGUAGCCGuu--GCG- -5'
23228 5' -52.9 NC_005259.1 + 52134 0.66 0.90076
Target:  5'- aCCGCCGUcCGGcaccucgccgagGCA--GGCAGCGCc -3'
miRNA:   3'- cGGUGGCA-GCCaa----------UGUagCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 14493 0.66 0.896643
Target:  5'- uCCGCUGcUCGGUgcccGCAUgcacacCGGCGagcACGCg -3'
miRNA:   3'- cGGUGGC-AGCCAa---UGUA------GCCGU---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 57426 0.66 0.896643
Target:  5'- uGCUACCGgcUCGcUUACG-CGGCGAgGUu -3'
miRNA:   3'- -CGGUGGC--AGCcAAUGUaGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 2087 0.66 0.889573
Target:  5'- gGCCugC-UCGaUUuCAUCGGCGAgGCc -3'
miRNA:   3'- -CGGugGcAGCcAAuGUAGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 17469 0.66 0.889573
Target:  5'- cCCACCGU-GGUgACGccCGGCcAUGCg -3'
miRNA:   3'- cGGUGGCAgCCAaUGUa-GCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 4503 0.66 0.889573
Target:  5'- cGCCACCGcgcCGGgag---UGGCGcuGCGCg -3'
miRNA:   3'- -CGGUGGCa--GCCaauguaGCCGU--UGCG- -5'
23228 5' -52.9 NC_005259.1 + 27748 0.66 0.889573
Target:  5'- uGCUGCCcaCGG-UGCAucgcccUCGGCGACGa -3'
miRNA:   3'- -CGGUGGcaGCCaAUGU------AGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 27162 0.66 0.889573
Target:  5'- gGCCaacgauGCCGUCGGcgaugaGCAggCuGCGACGCu -3'
miRNA:   3'- -CGG------UGGCAGCCaa----UGUa-GcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 66886 0.66 0.882991
Target:  5'- cGCCACgGcuugaucgugaacggCGG-UAgAUcCGGCAGCGCg -3'
miRNA:   3'- -CGGUGgCa--------------GCCaAUgUA-GCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.