miRNA display CGI


Results 21 - 40 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 56926 0.67 0.87467
Target:  5'- uGCC-CgCGUCGGUgagcaUGCGgUUGGCGAacuCGCg -3'
miRNA:   3'- -CGGuG-GCAGCCA-----AUGU-AGCCGUU---GCG- -5'
23228 5' -52.9 NC_005259.1 + 56375 0.66 0.903452
Target:  5'- aGCCGUCG-CGGgccGCGUCGGCugauCGUc -3'
miRNA:   3'- -CGGUGGCaGCCaa-UGUAGCCGuu--GCG- -5'
23228 5' -52.9 NC_005259.1 + 56272 0.68 0.786672
Target:  5'- cGCCGCCGccCGGcccgUAUCGGCAccaGCa -3'
miRNA:   3'- -CGGUGGCa-GCCaau-GUAGCCGUug-CG- -5'
23228 5' -52.9 NC_005259.1 + 54486 0.71 0.672333
Target:  5'- cCCGCCGagGGU--CAUCGGCGG-GCa -3'
miRNA:   3'- cGGUGGCagCCAauGUAGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 52963 0.79 0.2685
Target:  5'- cGCCGCUGccCGGcUGCAUCGGCAA-GCa -3'
miRNA:   3'- -CGGUGGCa-GCCaAUGUAGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 52769 0.72 0.585466
Target:  5'- --aGCuCGUCGGU---GUCGGCAGCGUg -3'
miRNA:   3'- cggUG-GCAGCCAaugUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 52620 0.69 0.776845
Target:  5'- gGCCAacuaCGUCGaGcUGCGUCGGCugugGgGCg -3'
miRNA:   3'- -CGGUg---GCAGC-CaAUGUAGCCGu---UgCG- -5'
23228 5' -52.9 NC_005259.1 + 52134 0.66 0.90076
Target:  5'- aCCGCCGUcCGGcaccucgccgagGCA--GGCAGCGCc -3'
miRNA:   3'- cGGUGGCA-GCCaa----------UGUagCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 52046 0.66 0.909997
Target:  5'- uGUCGCCGUCGa--GgAUCG-CGACGCc -3'
miRNA:   3'- -CGGUGGCAGCcaaUgUAGCcGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 51741 0.73 0.52163
Target:  5'- gGCCACCGccacgcucUCGGcagcgUUGCGcUCGGCgAGCGCc -3'
miRNA:   3'- -CGGUGGC--------AGCC-----AAUGU-AGCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 51659 0.71 0.639764
Target:  5'- gGUUGCCGcgCGGgcGCGUCGgGCAcggGCGCg -3'
miRNA:   3'- -CGGUGGCa-GCCaaUGUAGC-CGU---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 51263 0.67 0.841978
Target:  5'- gGCuCGCgGUggucaCGGUgcgcgGCAagCGGCAGCGCc -3'
miRNA:   3'- -CG-GUGgCA-----GCCAa----UGUa-GCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 51133 0.7 0.693878
Target:  5'- aUCACCGUCGGgg----CGGCcaugAGCGCg -3'
miRNA:   3'- cGGUGGCAGCCaauguaGCCG----UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 50751 0.72 0.616912
Target:  5'- aGCCGCCacgcgguGUCGGacgACAccUCGGCcuCGCg -3'
miRNA:   3'- -CGGUGG-------CAGCCaa-UGU--AGCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 50650 0.7 0.683129
Target:  5'- cGCCGCCcUCGGggcCAUagGGCAccaGCGCg -3'
miRNA:   3'- -CGGUGGcAGCCaauGUAg-CCGU---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 50307 0.74 0.490713
Target:  5'- uGCCACuCGUCG--UAC-UCGGCAACGa -3'
miRNA:   3'- -CGGUG-GCAGCcaAUGuAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 50272 0.68 0.796342
Target:  5'- cGCUGUCGUCGGUggcgggaACGUCGuGCA-CGCu -3'
miRNA:   3'- -CGGUGGCAGCCAa------UGUAGC-CGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 49699 0.69 0.756761
Target:  5'- cGCuCGCUGUCGGUgagauccgGCAgauauUCGGCGG-GCg -3'
miRNA:   3'- -CG-GUGGCAGCCAa-------UGU-----AGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 49628 0.69 0.73618
Target:  5'- cGUCAUCGgCGGcagccGCGUCGGCGAUGg -3'
miRNA:   3'- -CGGUGGCaGCCaa---UGUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 49303 0.67 0.873899
Target:  5'- -aCAUCGUCGGggucCAUCaGGCGcgagaauACGCg -3'
miRNA:   3'- cgGUGGCAGCCaau-GUAG-CCGU-------UGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.