miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 3' -57.3 NC_005259.1 + 59154 0.66 0.645548
Target:  5'- --gGUGCCGGGgAGCugcuCAGGGCgcuuauacaUGGCg -3'
miRNA:   3'- uuaUACGGCCCgUCGc---GUUCUG---------GCCG- -5'
23230 3' -57.3 NC_005259.1 + 32696 0.66 0.634691
Target:  5'- ----aGCCGGGCGGUgGUucGuacACUGGCa -3'
miRNA:   3'- uuauaCGGCCCGUCG-CGuuC---UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 55101 0.66 0.634691
Target:  5'- ---cUGCCGauGGCGGCGaaaaauGcACCGGCu -3'
miRNA:   3'- uuauACGGC--CCGUCGCguu---C-UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 52888 0.66 0.634691
Target:  5'- -----cUCGGGC-GCGCGAGuACgGGCa -3'
miRNA:   3'- uuauacGGCCCGuCGCGUUC-UGgCCG- -5'
23230 3' -57.3 NC_005259.1 + 68703 0.66 0.634691
Target:  5'- ----aGgCGGGCAGCGCG---UCGGUg -3'
miRNA:   3'- uuauaCgGCCCGUCGCGUucuGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 14209 0.66 0.633605
Target:  5'- ----gGCCGGGaucaacuaccCGGCGCGcgucgugcguaucGGGCCGGg -3'
miRNA:   3'- uuauaCGGCCC----------GUCGCGU-------------UCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 44677 0.66 0.623831
Target:  5'- ----cGuuGGGCAGCGU--GGCCcGCa -3'
miRNA:   3'- uuauaCggCCCGUCGCGuuCUGGcCG- -5'
23230 3' -57.3 NC_005259.1 + 68797 0.66 0.612978
Target:  5'- ----cGCCgGGGCGGUGUcGGugcCCGGUa -3'
miRNA:   3'- uuauaCGG-CCCGUCGCGuUCu--GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 34115 0.66 0.612978
Target:  5'- cGUGUcGCCGGGCGcgaGCAcGuCCGGUa -3'
miRNA:   3'- uUAUA-CGGCCCGUcg-CGUuCuGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 46788 0.66 0.612978
Target:  5'- ----cGCCGGGCcgaacaccgAGCcuGCGAGcgcaccACCGGCc -3'
miRNA:   3'- uuauaCGGCCCG---------UCG--CGUUC------UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 53552 0.66 0.602141
Target:  5'- uGUcgGCuCGGGCGGUGCGAu-CCGaGUa -3'
miRNA:   3'- uUAuaCG-GCCCGUCGCGUUcuGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 9044 0.66 0.602141
Target:  5'- cAUGUGCgGGGCGGUa----ACCGGCu -3'
miRNA:   3'- uUAUACGgCCCGUCGcguucUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 50393 0.66 0.602141
Target:  5'- --cGUGUCGcGGCucgccgAGCGCGccggugccuuGACCGGCu -3'
miRNA:   3'- uuaUACGGC-CCG------UCGCGUu---------CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 61595 0.66 0.601059
Target:  5'- cGGUggGCCggugGGGuCGGCGgGgaacagcAGACCGGCa -3'
miRNA:   3'- -UUAuaCGG----CCC-GUCGCgU-------UCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 1233 0.67 0.59133
Target:  5'- ------aCGaGGaCGGCuGCAAGACCGGCc -3'
miRNA:   3'- uuauacgGC-CC-GUCG-CGUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 36223 0.67 0.59133
Target:  5'- --gAUGCCGagcaccuuGGcCAGCGCGAGcGCCuGCg -3'
miRNA:   3'- uuaUACGGC--------CC-GUCGCGUUC-UGGcCG- -5'
23230 3' -57.3 NC_005259.1 + 54517 0.67 0.59133
Target:  5'- --gAUGUgGGGUGGCGgguCGAGuauCCGGCc -3'
miRNA:   3'- uuaUACGgCCCGUCGC---GUUCu--GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 2011 0.67 0.59133
Target:  5'- ----gGCCaucGGGUGGCGC---ACCGGCa -3'
miRNA:   3'- uuauaCGG---CCCGUCGCGuucUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 17171 0.67 0.590251
Target:  5'- ----aGCUGacgacaaGGCGGCGCAGGaaGCCGcGCg -3'
miRNA:   3'- uuauaCGGC-------CCGUCGCGUUC--UGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 64021 0.67 0.580552
Target:  5'- ----cGcCCGaGGC-GCgGCGAGGCCGGUg -3'
miRNA:   3'- uuauaC-GGC-CCGuCG-CGUUCUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.