Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 22457 | 0.75 | 0.294355 |
Target: 5'- gGCuACCucguGCGCCCGCGcgGUcUGACCGuCCg -3' miRNA: 3'- -CG-UGG----CGCGGGUGCuaCA-ACUGGU-GG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 36630 | 0.75 | 0.28656 |
Target: 5'- cGCGCCGCccgcaagGCCCGCGAUcagcgaGCCGCCg -3' miRNA: 3'- -CGUGGCG-------CGGGUGCUAcaac--UGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 8481 | 0.79 | 0.172378 |
Target: 5'- aGCACCGCGCUgucggCACuGAUGgUGugCACCa -3' miRNA: 3'- -CGUGGCGCGG-----GUG-CUACaACugGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 56661 | 0.81 | 0.121548 |
Target: 5'- gGCACCGCGCgUCACGGgcucGUUGcGCCACCc -3' miRNA: 3'- -CGUGGCGCG-GGUGCUa---CAAC-UGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 38814 | 0.81 | 0.121548 |
Target: 5'- cGC-CCGCGCCCGCGAUGaccgagucgaUGGCCugCu -3' miRNA: 3'- -CGuGGCGCGGGUGCUACa---------ACUGGugG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 14328 | 0.81 | 0.115087 |
Target: 5'- aCGCCGcCGCCCGCG-UGcgGGCCGCCg -3' miRNA: 3'- cGUGGC-GCGGGUGCuACaaCUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 45516 | 0.83 | 0.092323 |
Target: 5'- cCACCGCGCC---GGUGUUGGCCGCCg -3' miRNA: 3'- cGUGGCGCGGgugCUACAACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 37385 | 0.84 | 0.082608 |
Target: 5'- gGCACCGCccgccgcgccGCCCAUGGUGUUGuugacGCCGCCc -3' miRNA: 3'- -CGUGGCG----------CGGGUGCUACAAC-----UGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 46884 | 0.84 | 0.071832 |
Target: 5'- cGCGCCGcCGCCCGCGAUGagcGcCCGCCg -3' miRNA: 3'- -CGUGGC-GCGGGUGCUACaa-CuGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 41405 | 0.91 | 0.024292 |
Target: 5'- cGCGCCGCucgggguGCCCACGAUGUgcacgGGCCGCCa -3' miRNA: 3'- -CGUGGCG-------CGGGUGCUACAa----CUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 4652 | 0.78 | 0.186544 |
Target: 5'- cGCACCGCGCCuacgggCACGGUGUcugcacUGGCUcggGCCg -3' miRNA: 3'- -CGUGGCGCGG------GUGCUACA------ACUGG---UGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 42194 | 0.78 | 0.186544 |
Target: 5'- cGCugCGCGCCguCGCGAUGgaUGcCCGCCg -3' miRNA: 3'- -CGugGCGCGG--GUGCUACa-ACuGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 14282 | 0.76 | 0.266792 |
Target: 5'- aCACCGCcuGCCCAaccacCGAUGUcggugcguaUGGCCGCCc -3' miRNA: 3'- cGUGGCG--CGGGU-----GCUACA---------ACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 46946 | 0.76 | 0.260235 |
Target: 5'- cGCGCCGCcgaCCGCGuugagcuUGUUGGCCACg -3' miRNA: 3'- -CGUGGCGcg-GGUGCu------ACAACUGGUGg -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 60487 | 0.76 | 0.260235 |
Target: 5'- cGCACCaGCGCCCAgcacgcgcCGGUGUUgucguaGugCGCCa -3' miRNA: 3'- -CGUGG-CGCGGGU--------GCUACAA------CugGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 48072 | 0.76 | 0.253811 |
Target: 5'- cCGCCGCGCCCugagcgAUGGUGUUGAgC-CCg -3' miRNA: 3'- cGUGGCGCGGG------UGCUACAACUgGuGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 62822 | 0.76 | 0.251277 |
Target: 5'- aGCGCCGCuuGCCCGCGAggucgagcgcgcgGUUGACgagcaGCCg -3' miRNA: 3'- -CGUGGCG--CGGGUGCUa------------CAACUGg----UGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 35199 | 0.76 | 0.247517 |
Target: 5'- aGCACCGUGCCgCcugaggcgGCGAggaacgUGACCGCCa -3' miRNA: 3'- -CGUGGCGCGG-G--------UGCUaca---ACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 5517 | 0.77 | 0.223627 |
Target: 5'- cGCGCCGCGCCCGCaagcugUGGCUGCUc -3' miRNA: 3'- -CGUGGCGCGGGUGcuaca-ACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 19889 | 0.77 | 0.20702 |
Target: 5'- aCGCCGCGCCCAaGAUGUgcGACaACCa -3' miRNA: 3'- cGUGGCGCGGGUgCUACAa-CUGgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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