miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 3' -56.1 NC_005259.1 + 24553 0.66 0.769097
Target:  5'- cCAGaUCGgCGGGGUGuacUCGUGggCACCg -3'
miRNA:   3'- aGUC-GGUgGCUCCACu--AGCGCa-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 6440 0.66 0.759194
Target:  5'- gUCGG-CACCGucGcgcUGAUCggcaGCGUCGCCg -3'
miRNA:   3'- -AGUCgGUGGCucC---ACUAG----CGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 45734 0.66 0.749169
Target:  5'- gCA-CCACCGAGGc---CGCG-CACCg -3'
miRNA:   3'- aGUcGGUGGCUCCacuaGCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 60929 0.66 0.739032
Target:  5'- -gAGCUcgGCCuuGGUGAUCGUcugCACCa -3'
miRNA:   3'- agUCGG--UGGcuCCACUAGCGca-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 11015 0.66 0.728793
Target:  5'- cCGGaCgCGCCGAGGcagGAguUCGCcgggugGUCACCg -3'
miRNA:   3'- aGUC-G-GUGGCUCCa--CU--AGCG------CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 46589 0.67 0.718463
Target:  5'- --cGCCGcCCGAGGcGAgcagCGCGUCGu- -3'
miRNA:   3'- aguCGGU-GGCUCCaCUa---GCGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 5553 0.67 0.718463
Target:  5'- -aGGCCGCgUGGGGUGGUgacgGCGagACCg -3'
miRNA:   3'- agUCGGUG-GCUCCACUAg---CGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 25926 0.67 0.718463
Target:  5'- --cGCCGCCGGuccGGUGAgCGCa-CGCCg -3'
miRNA:   3'- aguCGGUGGCU---CCACUaGCGcaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 20773 0.67 0.708052
Target:  5'- cCGcCCACCG-GGUGG-CGCGUCgacagcaagaGCCa -3'
miRNA:   3'- aGUcGGUGGCuCCACUaGCGCAG----------UGG- -5'
23232 3' -56.1 NC_005259.1 + 66931 0.67 0.708052
Target:  5'- --uGCUcgACCGGGGUGAgCGgGaCACCg -3'
miRNA:   3'- aguCGG--UGGCUCCACUaGCgCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 28229 0.67 0.697572
Target:  5'- --cGCCACCGucggcggcgGGGUGGUCGa-UCACg -3'
miRNA:   3'- aguCGGUGGC---------UCCACUAGCgcAGUGg -5'
23232 3' -56.1 NC_005259.1 + 52403 0.67 0.697572
Target:  5'- -gGGCCAUCGAGGUGugggCGC-UCgACUc -3'
miRNA:   3'- agUCGGUGGCUCCACua--GCGcAG-UGG- -5'
23232 3' -56.1 NC_005259.1 + 33131 0.67 0.687031
Target:  5'- gCAGCCGCCGcGcGUGAUCuugcCGUagACCg -3'
miRNA:   3'- aGUCGGUGGCuC-CACUAGc---GCAg-UGG- -5'
23232 3' -56.1 NC_005259.1 + 65562 0.67 0.685974
Target:  5'- aUCGGCCcauagacACCGAGG-GAcggGCGUCaaACCg -3'
miRNA:   3'- -AGUCGG-------UGGCUCCaCUag-CGCAG--UGG- -5'
23232 3' -56.1 NC_005259.1 + 53725 0.67 0.67644
Target:  5'- --cGCCGCUGAuGGUGA---UGUCGCCg -3'
miRNA:   3'- aguCGGUGGCU-CCACUagcGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 31719 0.68 0.65515
Target:  5'- cCGGUCuucuCUGAGGUGAcCGCGcCuGCCg -3'
miRNA:   3'- aGUCGGu---GGCUCCACUaGCGCaG-UGG- -5'
23232 3' -56.1 NC_005259.1 + 23006 0.68 0.65515
Target:  5'- -aGGUCACCGAGGacgGcUCG-GUCAUCg -3'
miRNA:   3'- agUCGGUGGCUCCa--CuAGCgCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 21381 0.68 0.644471
Target:  5'- cCAGUCGCCGAGGcGGUgcaaCGCG-CAUg -3'
miRNA:   3'- aGUCGGUGGCUCCaCUA----GCGCaGUGg -5'
23232 3' -56.1 NC_005259.1 + 903 0.68 0.644471
Target:  5'- ----aCACCGAGGUGGUgcccgGCGaUCACCu -3'
miRNA:   3'- agucgGUGGCUCCACUAg----CGC-AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 52027 0.68 0.644471
Target:  5'- -aGGCCGCCGcacUGcgCGCuGUCGCCg -3'
miRNA:   3'- agUCGGUGGCuccACuaGCG-CAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.