Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 15531 | 0.73 | 0.173218 |
Target: 5'- aGCACU---CAGGCCGCCGUCacugGCCGGu -3' miRNA: 3'- gCGUGGcucGUCUGGCGGCAG----CGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 46904 | 0.73 | 0.177645 |
Target: 5'- gCGCccGCCGAGCAGuCCGCgugCGcCGCCGa -3' miRNA: 3'- -GCG--UGGCUCGUCuGGCG---GCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 60278 | 0.73 | 0.182173 |
Target: 5'- gCGCuGCCGGGCGG-CCaUCGUCGUCGGu -3' miRNA: 3'- -GCG-UGGCUCGUCuGGcGGCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 20245 | 0.73 | 0.191534 |
Target: 5'- cCGCACCcuguGC-GACaCGCCG-CGCCGGg -3' miRNA: 3'- -GCGUGGcu--CGuCUG-GCGGCaGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 65986 | 0.72 | 0.211527 |
Target: 5'- gCGCGCCGAGCAG-CCGCuCGaCGUggugcgcacccuCGGg -3' miRNA: 3'- -GCGUGGCUCGUCuGGCG-GCaGCG------------GCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 42943 | 0.72 | 0.211527 |
Target: 5'- -uCGCCGugGGCgAGGCCGCCGUUGUCGa -3' miRNA: 3'- gcGUGGC--UCG-UCUGGCGGCAGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 17783 | 0.72 | 0.211527 |
Target: 5'- gCGCACCGAGCGugcgcACCGCgauagCGagGCCGGu -3' miRNA: 3'- -GCGUGGCUCGUc----UGGCG-----GCagCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 1873 | 0.72 | 0.227679 |
Target: 5'- cCGCGuuCCGuaAGCAGGCCGCCGagaUCGCgCGa -3' miRNA: 3'- -GCGU--GGC--UCGUCUGGCGGC---AGCG-GCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 24115 | 0.72 | 0.227679 |
Target: 5'- gGgACCGGGCGGggacuacaccGCCGCCGcccugcUCGCCGa -3' miRNA: 3'- gCgUGGCUCGUC----------UGGCGGC------AGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 43823 | 0.72 | 0.227679 |
Target: 5'- gCGUACCGccGGacacaGGGCCGCCGcUCGCCa- -3' miRNA: 3'- -GCGUGGC--UCg----UCUGGCGGC-AGCGGcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 43873 | 0.71 | 0.23329 |
Target: 5'- aCGaCACCG-GCAGcguuGCCGCCGacauugcccgCGCCGGc -3' miRNA: 3'- -GC-GUGGCuCGUC----UGGCGGCa---------GCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 58669 | 0.71 | 0.237863 |
Target: 5'- uGCACCGGggugcagcuuccaucGCGGggucggcucgucgccGCCGCCGucaccaUCGCCGGg -3' miRNA: 3'- gCGUGGCU---------------CGUC---------------UGGCGGC------AGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 6443 | 0.71 | 0.239018 |
Target: 5'- gGCACCGucgcGCuGAUCGgcagCGUCGCCGGu -3' miRNA: 3'- gCGUGGCu---CGuCUGGCg---GCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 55902 | 0.71 | 0.239018 |
Target: 5'- uCGCGCCGGGgucgcuggcCAGACCGCUGgucUGCuCGGc -3' miRNA: 3'- -GCGUGGCUC---------GUCUGGCGGCa--GCG-GCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 8818 | 0.71 | 0.239018 |
Target: 5'- uCGCGCCGGGCcggugaguuGACgCGCUG-CGCCGa -3' miRNA: 3'- -GCGUGGCUCGu--------CUG-GCGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 38736 | 0.71 | 0.239018 |
Target: 5'- cCGUACCG-GCGGuggcCCGCCGcagGCCGGu -3' miRNA: 3'- -GCGUGGCuCGUCu---GGCGGCag-CGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 43719 | 0.71 | 0.250223 |
Target: 5'- cCGCAUCGAgucgaugGCGGccauGCCGCCGa-GCCGGg -3' miRNA: 3'- -GCGUGGCU-------CGUC----UGGCGGCagCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 12213 | 0.71 | 0.250825 |
Target: 5'- uGCACCG-GCGcACCGCCcgcUgGCCGGg -3' miRNA: 3'- gCGUGGCuCGUcUGGCGGc--AgCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 13440 | 0.71 | 0.250825 |
Target: 5'- cCGCGCUaGGCGuGACCGUCGgcgcggCGCUGGu -3' miRNA: 3'- -GCGUGGcUCGU-CUGGCGGCa-----GCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 37184 | 0.71 | 0.255069 |
Target: 5'- gCGCGaggaCGAGCugcGGcccuugccgccaccGCCGCCGcCGCCGGg -3' miRNA: 3'- -GCGUg---GCUCG---UC--------------UGGCGGCaGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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