miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23235 3' -62.7 NC_005259.1 + 20490 0.66 0.392962
Target:  5'- cGaCACCGCCCGGCagCUCAUCg-GCGa -3'
miRNA:   3'- aCcGUGGCGGGCCG--GGGUAGagUGCg -5'
23235 3' -62.7 NC_005259.1 + 53205 0.66 0.392962
Target:  5'- cGGCGaucagauucgcgUCGCCCGcGCCCUgcuugaggUUCGCGCc -3'
miRNA:   3'- aCCGU------------GGCGGGC-CGGGGua------GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 3143 0.66 0.396373
Target:  5'- cGGCACCGCCCgugggacuacacGGUgaugCCCggcgaugucaaggucGUCggugCGCGCa -3'
miRNA:   3'- aCCGUGGCGGG------------CCG----GGG---------------UAGa---GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 12321 0.66 0.401524
Target:  5'- gUGcGCACCGCC--GCCag--CUCACGCa -3'
miRNA:   3'- -AC-CGUGGCGGgcCGGgguaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 27409 0.66 0.410205
Target:  5'- cGGCGgCaGCUCGGUgCCCGcgaggaauuggCUCACGCg -3'
miRNA:   3'- aCCGUgG-CGGGCCG-GGGUa----------GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 47765 0.66 0.410205
Target:  5'- cGGCugCGCgaUGGCCUUuuggaaaUCGCGCa -3'
miRNA:   3'- aCCGugGCGg-GCCGGGGuag----AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 7429 0.66 0.419
Target:  5'- cGGCGgUGCCCGcGCCgCAUggCAgCGCc -3'
miRNA:   3'- aCCGUgGCGGGC-CGGgGUAgaGU-GCG- -5'
23235 3' -62.7 NC_005259.1 + 51217 0.66 0.42791
Target:  5'- cGGUagaucACCGCCggaucguaGGCCCgGUacgUCACGCc -3'
miRNA:   3'- aCCG-----UGGCGGg-------CCGGGgUAg--AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 4682 0.66 0.42791
Target:  5'- cUGGCucggGCCgacaGCUCGGCCCCGUggugcgaugaC-CGCGCc -3'
miRNA:   3'- -ACCG----UGG----CGGGCCGGGGUA----------GaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 11444 0.66 0.42791
Target:  5'- gGGCcgcucgcuGCCGCCgGuGCCUauCGUCUCGCa- -3'
miRNA:   3'- aCCG--------UGGCGGgC-CGGG--GUAGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 44688 0.66 0.42791
Target:  5'- gUGGC-CCGCauaUGGCCCgCGUCcCACcCg -3'
miRNA:   3'- -ACCGuGGCGg--GCCGGG-GUAGaGUGcG- -5'
23235 3' -62.7 NC_005259.1 + 1376 0.66 0.42791
Target:  5'- -cGCGCCGCCCgcgaGGCCCgCGcaugagccUCUCAUa- -3'
miRNA:   3'- acCGUGGCGGG----CCGGG-GU--------AGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 46306 0.7 0.213884
Target:  5'- gUGGCugCGUUguucgCGGCCCCgaggGUCgcgUCGCGCa -3'
miRNA:   3'- -ACCGugGCGG-----GCCGGGG----UAG---AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 35740 0.89 0.008739
Target:  5'- cGGCGCUGCCCGGCCCCAcgUUCAUGUa -3'
miRNA:   3'- aCCGUGGCGGGCCGGGGUa-GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 13011 0.85 0.017546
Target:  5'- cGGCuacgccGCCGCCCGGCCCCAg--CACGCc -3'
miRNA:   3'- aCCG------UGGCGGGCCGGGGUagaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 62005 0.78 0.064047
Target:  5'- gGGCACCGUgCGGUguaCCCG-CUCGCGCu -3'
miRNA:   3'- aCCGUGGCGgGCCG---GGGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 52246 0.77 0.077397
Target:  5'- --cUACCGCCCGGCCCC-UCUCAgGg -3'
miRNA:   3'- accGUGGCGGGCCGGGGuAGAGUgCg -5'
23235 3' -62.7 NC_005259.1 + 44516 0.75 0.095915
Target:  5'- cUGGCcacccacgccGCCGCCCGGCaguCCA-CUCAUGCc -3'
miRNA:   3'- -ACCG----------UGGCGGGCCGg--GGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 56262 0.74 0.118569
Target:  5'- cGGCcuugagcgccGCCGCCCGGCCCgUAUCggCACcaGCa -3'
miRNA:   3'- aCCG----------UGGCGGGCCGGG-GUAGa-GUG--CG- -5'
23235 3' -62.7 NC_005259.1 + 9777 0.74 0.128286
Target:  5'- cUGGCucgacuuCUGCCCGGUgugCCCG-CUCGCGCc -3'
miRNA:   3'- -ACCGu------GGCGGGCCG---GGGUaGAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.