miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23237 5' -56.7 NC_005259.1 + 59112 0.66 0.749603
Target:  5'- gUCAGcaCGCgCGG-CAUCGagcaGAGCGUCg -3'
miRNA:   3'- -AGUCcaGCG-GCCaGUAGCg---CUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 1298 0.66 0.739555
Target:  5'- -gAGGUCGagcucuaCGcg-GUCGUGAGCGCCa -3'
miRNA:   3'- agUCCAGCg------GCcagUAGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 12790 0.66 0.739555
Target:  5'- aCGGGUguucaGCCGGUacgcuGUCGCGcgcACGCg -3'
miRNA:   3'- aGUCCAg----CGGCCAg----UAGCGCu--UGCGg -5'
23237 5' -56.7 NC_005259.1 + 58343 0.66 0.729407
Target:  5'- aUCAGGUCGgUGGcC-UCGgGcACGUCg -3'
miRNA:   3'- -AGUCCAGCgGCCaGuAGCgCuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 32045 0.66 0.729407
Target:  5'- aUCGGGUUGCUGaGgaacgCGUCGaacGAUGCCu -3'
miRNA:   3'- -AGUCCAGCGGC-Ca----GUAGCgc-UUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 33210 0.66 0.723275
Target:  5'- aUCAGcacguucuuguugccGcCGCCGGUCAcCGCGuacgUGCCa -3'
miRNA:   3'- -AGUC---------------CaGCGGCCAGUaGCGCuu--GCGG- -5'
23237 5' -56.7 NC_005259.1 + 15697 0.66 0.719169
Target:  5'- cUCAGaUCgaGCCGGUCA---CGAugGCCa -3'
miRNA:   3'- -AGUCcAG--CGGCCAGUagcGCUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 45635 0.66 0.719169
Target:  5'- cCGGGcagcgCGCCGGUgcCGcCGUGAAcacCGCCg -3'
miRNA:   3'- aGUCCa----GCGGCCA--GUaGCGCUU---GCGG- -5'
23237 5' -56.7 NC_005259.1 + 4334 0.66 0.719169
Target:  5'- -----gUGCCGGaccUCGUCGCGGugaugaGCGCCg -3'
miRNA:   3'- aguccaGCGGCC---AGUAGCGCU------UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 50615 0.66 0.717111
Target:  5'- gUAGGUCGaauacagcacagCGGUCcaUGCGAuuACGCCg -3'
miRNA:   3'- aGUCCAGCg-----------GCCAGuaGCGCU--UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 47890 0.66 0.708851
Target:  5'- cCGGGUcagCGUCGG-C-UCGuUGAGCGCCu -3'
miRNA:   3'- aGUCCA---GCGGCCaGuAGC-GCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 10765 0.67 0.698463
Target:  5'- aUCAuGUCggGCgGGUCAUCgaggugggccGCGAGCGCa -3'
miRNA:   3'- -AGUcCAG--CGgCCAGUAG----------CGCUUGCGg -5'
23237 5' -56.7 NC_005259.1 + 33552 0.67 0.698463
Target:  5'- ---cGUCGCCGGUCAggaaGAAcCGCCc -3'
miRNA:   3'- agucCAGCGGCCAGUagcgCUU-GCGG- -5'
23237 5' -56.7 NC_005259.1 + 34114 0.67 0.698463
Target:  5'- aCGuGUCGCCGGg---CGCGAgcACGUCc -3'
miRNA:   3'- aGUcCAGCGGCCaguaGCGCU--UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 17332 0.67 0.698463
Target:  5'- -aGGGUgUGCCGGUCAaCGU---CGCCg -3'
miRNA:   3'- agUCCA-GCGGCCAGUaGCGcuuGCGG- -5'
23237 5' -56.7 NC_005259.1 + 27904 0.67 0.698463
Target:  5'- -gGGGUCGCCGaGaCcgCGCGggUGgUa -3'
miRNA:   3'- agUCCAGCGGC-CaGuaGCGCuuGCgG- -5'
23237 5' -56.7 NC_005259.1 + 42971 0.67 0.698463
Target:  5'- aCGGGaUGCCGGggaUCAUCGUugcCGCCc -3'
miRNA:   3'- aGUCCaGCGGCC---AGUAGCGcuuGCGG- -5'
23237 5' -56.7 NC_005259.1 + 19855 0.67 0.66698
Target:  5'- cUCGGuGUggcgcucgcgccCGCCGGg-AUCGCcGACGCCg -3'
miRNA:   3'- -AGUC-CA------------GCGGCCagUAGCGcUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 57069 0.68 0.635223
Target:  5'- aUCGGGUCGaaCGcGUCgaggauGUCGgguCGAGCGCCa -3'
miRNA:   3'- -AGUCCAGCg-GC-CAG------UAGC---GCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 28969 0.68 0.635223
Target:  5'- -gAGGUCgguGCCGaGgc--CGCGAGCGCCc -3'
miRNA:   3'- agUCCAG---CGGC-CaguaGCGCUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.