miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 53731 0.71 0.391294
Target:  5'- uGAugGUGAugucGCCgGguguccacucggUGCCGCCGAACa -3'
miRNA:   3'- cCUugCGCU----CGGgCa-----------ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 6350 0.71 0.400964
Target:  5'- cGGGgugccguACGUGcGCaCGUUGUCGCCGGGCg -3'
miRNA:   3'- -CCU-------UGCGCuCGgGCAACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 50443 0.7 0.419842
Target:  5'- ---gUGCGGGCUCGggGUCGCCGGu- -3'
miRNA:   3'- ccuuGCGCUCGGGCaaCGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 62932 0.7 0.419842
Target:  5'- cGGuuUGCG-GCUCGcgcUGCUGCCGGGCa -3'
miRNA:   3'- -CCuuGCGCuCGGGCa--ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 26557 0.7 0.419842
Target:  5'- --cAC-CGAGgCUGUaGCCGCCGAGCa -3'
miRNA:   3'- ccuUGcGCUCgGGCAaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43797 0.7 0.429018
Target:  5'- -cAGCGCGGGCaCCGaguccUUGCCgggcguaccGCCGGACa -3'
miRNA:   3'- ccUUGCGCUCG-GGC-----AACGG---------CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 30697 0.7 0.429018
Target:  5'- aGGcAGCaCGAGCgugUUGUUGCCGCCGAcGCg -3'
miRNA:   3'- -CC-UUGcGCUCG---GGCAACGGCGGCU-UG- -5'
23240 3' -57.5 NC_005259.1 + 46901 0.7 0.438312
Target:  5'- uGAGCGCccgccGAGCaguccgCGUgcGCCGCCGAGCu -3'
miRNA:   3'- cCUUGCG-----CUCGg-----GCAa-CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 11434 0.7 0.438312
Target:  5'- gGGGAUGCuuGGGCCgcuCGcUGCCGCCGGu- -3'
miRNA:   3'- -CCUUGCG--CUCGG---GCaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 45309 0.7 0.44772
Target:  5'- cGGuGACGcCGAGgCC---GCCGCCGAACu -3'
miRNA:   3'- -CC-UUGC-GCUCgGGcaaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 9083 0.7 0.44772
Target:  5'- ----aGCauaGGCCCGUUGcCCGCCGAGg -3'
miRNA:   3'- ccuugCGc--UCGGGCAAC-GGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 23286 0.7 0.451515
Target:  5'- cGGGCGCGgugguuggguaucggGGUCCGgcgcggucggUGUCGCCGAGCc -3'
miRNA:   3'- cCUUGCGC---------------UCGGGCa---------ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 22044 0.69 0.476595
Target:  5'- aGAAcCGCGAGCCCGUccucaugGUCGCUcaccgugguGAGCu -3'
miRNA:   3'- cCUU-GCGCUCGGGCAa------CGGCGG---------CUUG- -5'
23240 3' -57.5 NC_005259.1 + 27722 0.69 0.476595
Target:  5'- uGGAACGCGuacuuguucgcGCCCGcUGCUGCCc--- -3'
miRNA:   3'- -CCUUGCGCu----------CGGGCaACGGCGGcuug -5'
23240 3' -57.5 NC_005259.1 + 36954 0.69 0.476595
Target:  5'- gGGGugccCGCGAgaccgccucgGCCCGca-CCGCCGAACg -3'
miRNA:   3'- -CCUu---GCGCU----------CGGGCaacGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 45543 0.69 0.49635
Target:  5'- ---cUGCGAGCggGUUGCuCGCCGGGCc -3'
miRNA:   3'- ccuuGCGCUCGggCAACG-GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 66039 0.69 0.49635
Target:  5'- --cGCGCGAGCUCGacguagacGCCGCCGugGGCc -3'
miRNA:   3'- ccuUGCGCUCGGGCaa------CGGCGGC--UUG- -5'
23240 3' -57.5 NC_005259.1 + 26128 0.69 0.49635
Target:  5'- cGGu-CGCcGGUCCGacGCCGCCGAGg -3'
miRNA:   3'- -CCuuGCGcUCGGGCaaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 48603 0.69 0.505359
Target:  5'- cGAGCGCGGGCgcuaccgCCGUgcgcacUGCCucGCCGAGa -3'
miRNA:   3'- cCUUGCGCUCG-------GGCA------ACGG--CGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 63126 0.69 0.516465
Target:  5'- aGGGugGUGAGgUCGUaGCCGCUGucCu -3'
miRNA:   3'- -CCUugCGCUCgGGCAaCGGCGGCuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.