miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 5' -55.1 NC_005259.1 + 67163 0.68 0.662117
Target:  5'- cGAugGuGgCGGCcAUGCCGCCGAu- -3'
miRNA:   3'- uCUugUuUgGCCGcUACGGCGGCUcg -5'
23241 5' -55.1 NC_005259.1 + 66944 0.7 0.543755
Target:  5'- uGAGCGGgacACCGGCGAgcuguuucuUGCgCGCCucGCg -3'
miRNA:   3'- uCUUGUU---UGGCCGCU---------ACG-GCGGcuCG- -5'
23241 5' -55.1 NC_005259.1 + 63850 0.69 0.586403
Target:  5'- aAGcGCGuACCGGCGAgGUgGCCG-GCu -3'
miRNA:   3'- -UCuUGUuUGGCCGCUaCGgCGGCuCG- -5'
23241 5' -55.1 NC_005259.1 + 63163 0.67 0.715565
Target:  5'- uGAGC-AGCCGcCGcagcGCCGCCGAGg -3'
miRNA:   3'- uCUUGuUUGGCcGCua--CGGCGGCUCg -5'
23241 5' -55.1 NC_005259.1 + 62932 0.66 0.805818
Target:  5'- cGGuuuGC-GGCUcGCGcUGCUGCCGGGCa -3'
miRNA:   3'- -UCu--UGuUUGGcCGCuACGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 62858 0.66 0.776943
Target:  5'- cGAGCAGccGCuCGGCGcgagguagGCCGCUcggucauuGAGCg -3'
miRNA:   3'- uCUUGUU--UG-GCCGCua------CGGCGG--------CUCG- -5'
23241 5' -55.1 NC_005259.1 + 61617 0.68 0.651305
Target:  5'- gGGAacaGCAGACCGGCa---CCGCCGAc- -3'
miRNA:   3'- -UCU---UGUUUGGCCGcuacGGCGGCUcg -5'
23241 5' -55.1 NC_005259.1 + 60258 0.67 0.704992
Target:  5'- gGGuGCAAgGCUGGCcaccagcGCUGCCGGGCg -3'
miRNA:   3'- -UCuUGUU-UGGCCGcua----CGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 59129 0.68 0.69435
Target:  5'- cGAGCAGAgCGucgagcucggcaGCGGUGCCGggGAGCu -3'
miRNA:   3'- uCUUGUUUgGC------------CGCUACGGCggCUCG- -5'
23241 5' -55.1 NC_005259.1 + 58572 0.75 0.291031
Target:  5'- uGGGcCGGAUcgCGGCGcgGCUGCCGGGCc -3'
miRNA:   3'- -UCUuGUUUG--GCCGCuaCGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 57467 0.7 0.533243
Target:  5'- -cGGCAGGCCGGUGGcaccgGacaCGUCGAGCg -3'
miRNA:   3'- ucUUGUUUGGCCGCUa----Cg--GCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 57313 0.67 0.704992
Target:  5'- cGAGC--ACCGGCGGUGUCGgUGuGGUc -3'
miRNA:   3'- uCUUGuuUGGCCGCUACGGCgGC-UCG- -5'
23241 5' -55.1 NC_005259.1 + 56885 0.68 0.662117
Target:  5'- uGAGCcGACCGccaaucgcaGCGugGCCGCCGcAGCa -3'
miRNA:   3'- uCUUGuUUGGC---------CGCuaCGGCGGC-UCG- -5'
23241 5' -55.1 NC_005259.1 + 56406 0.66 0.786727
Target:  5'- cGAugGugcCCGGC----CCGCCGAGCu -3'
miRNA:   3'- uCUugUuu-GGCCGcuacGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 56301 0.66 0.794443
Target:  5'- cAGAcCAcguGGCCGGacccucgucGCCGUCGAGCa -3'
miRNA:   3'- -UCUuGU---UUGGCCgcua-----CGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 55852 0.69 0.586403
Target:  5'- uGGACuGAACC-GUGGUGaacuCGCCGAGCg -3'
miRNA:   3'- uCUUG-UUUGGcCGCUACg---GCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 55340 0.68 0.69435
Target:  5'- cGGcAGCGG--UGGCGAUGCCGaacgcCUGAGCg -3'
miRNA:   3'- -UC-UUGUUugGCCGCUACGGC-----GGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 55111 0.68 0.639392
Target:  5'- -cGGCGAaaaaugcACCGGC--UGCCguGCCGAGCa -3'
miRNA:   3'- ucUUGUU-------UGGCCGcuACGG--CGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 54727 0.68 0.68365
Target:  5'- cAGGACAuAGCCGaggcugccgacaGCGAUcagGCCGCCGAc- -3'
miRNA:   3'- -UCUUGU-UUGGC------------CGCUA---CGGCGGCUcg -5'
23241 5' -55.1 NC_005259.1 + 53710 0.72 0.452266
Target:  5'- uGAACGuggucACCgcgccgcugauGGUGAUGUCGCCGGGUg -3'
miRNA:   3'- uCUUGUu----UGG-----------CCGCUACGGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.