miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23242 5' -56.3 NC_005259.1 + 48381 0.66 0.706413
Target:  5'- cGCGuCUGUuGUcGUUGCcGCCGacgcCCGCCg -3'
miRNA:   3'- aCGU-GACAcCA-UAACGaCGGC----GGCGG- -5'
23242 5' -56.3 NC_005259.1 + 35670 0.66 0.706413
Target:  5'- aGCGCgGUGGUggUGCacaGCgaCGCCGUg -3'
miRNA:   3'- aCGUGaCACCAuaACGa--CG--GCGGCGg -5'
23242 5' -56.3 NC_005259.1 + 36820 0.66 0.706413
Target:  5'- gGCGCgGUGagacccacgguuGUGcacgUGCUGaCGCCGCCc -3'
miRNA:   3'- aCGUGaCAC------------CAUa---ACGACgGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 53725 0.66 0.700018
Target:  5'- cGcCGCUGaUGGUGaUGUcGCCggguguccacucgguGCCGCCg -3'
miRNA:   3'- aC-GUGAC-ACCAUaACGaCGG---------------CGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 17372 0.66 0.695742
Target:  5'- gGCGCUggucGUGGUcgacUGCgacaCUGCCGCCc -3'
miRNA:   3'- aCGUGA----CACCAua--ACGac--GGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 26174 0.66 0.694671
Target:  5'- cGCGucCUGUGcgaucuccagaauGUGcgGCagcaugGCCGCCGCCg -3'
miRNA:   3'- aCGU--GACAC-------------CAUaaCGa-----CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 20128 0.66 0.683934
Target:  5'- cGCACUG-------GCUGCCGUCGCg -3'
miRNA:   3'- aCGUGACaccauaaCGACGGCGGCGg -5'
23242 5' -56.3 NC_005259.1 + 18651 0.66 0.681781
Target:  5'- cGCAUUGgcgcgaua-UGCCGCCGCCc -3'
miRNA:   3'- aCGUGACaccauaacgACGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 56201 0.66 0.66341
Target:  5'- cGCgaGCUGUgcucaaggaucGGUGUaUGCcagucGUCGCCGCCg -3'
miRNA:   3'- aCG--UGACA-----------CCAUA-ACGa----CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 40119 0.67 0.652562
Target:  5'- aUGCGCUcGUGGaAUUgGCgggcgaGCuCGCCGUCg -3'
miRNA:   3'- -ACGUGA-CACCaUAA-CGa-----CG-GCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 33112 0.67 0.652562
Target:  5'- gUGC-CUGUaGGgccacgcgGCaGCCGCCGCg -3'
miRNA:   3'- -ACGuGACA-CCauaa----CGaCGGCGGCGg -5'
23242 5' -56.3 NC_005259.1 + 27145 0.67 0.641695
Target:  5'- gGCgGCUGcGGUGUUGggGCCaacgauGCCGUCg -3'
miRNA:   3'- aCG-UGACaCCAUAACgaCGG------CGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 48541 0.67 0.641695
Target:  5'- gGCGCUGUcgccGGUcUUGUUGUaCGCgCGCUg -3'
miRNA:   3'- aCGUGACA----CCAuAACGACG-GCG-GCGG- -5'
23242 5' -56.3 NC_005259.1 + 23866 0.67 0.641695
Target:  5'- gGCACaccgaGUGGaugcgcUAUccGCUGCCGCCcgaGCCg -3'
miRNA:   3'- aCGUGa----CACC------AUAa-CGACGGCGG---CGG- -5'
23242 5' -56.3 NC_005259.1 + 65049 0.67 0.63082
Target:  5'- cUGCGCgccacaGGUAUgUGCcuugUGUCGCUGCCa -3'
miRNA:   3'- -ACGUGaca---CCAUA-ACG----ACGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 40560 0.67 0.609082
Target:  5'- cGCGCgcccgcGcGGUGUUGCUGUCGgCGgCu -3'
miRNA:   3'- aCGUGa-----CaCCAUAACGACGGCgGCgG- -5'
23242 5' -56.3 NC_005259.1 + 58439 0.68 0.602573
Target:  5'- uUGCGCUGaucgguggccuUGGUGaucgcggccaccagUGCgugGCUGUCGCCg -3'
miRNA:   3'- -ACGUGAC-----------ACCAUa-------------ACGa--CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 43937 0.68 0.598238
Target:  5'- cGCGCUacugacagcGUcGGcgAUggGCgggGCCGCCGCCu -3'
miRNA:   3'- aCGUGA---------CA-CCa-UAa-CGa--CGGCGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 43655 0.68 0.576643
Target:  5'- cUGCGCcGacGGUGUcGUUGCCgaucacaccGCCGCCg -3'
miRNA:   3'- -ACGUGaCa-CCAUAaCGACGG---------CGGCGG- -5'
23242 5' -56.3 NC_005259.1 + 5415 0.68 0.572344
Target:  5'- cGCGCUGgccgccacgucgaGGUc-UGCgcccGCUGCCGCCg -3'
miRNA:   3'- aCGUGACa------------CCAuaACGa---CGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.