miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23246 3' -61 NC_005259.1 + 64012 0.68 0.366879
Target:  5'- aUAC-CACCGCGCCCgagGCgCGGCGa--- -3'
miRNA:   3'- -GUGaGUGGCGCGGGa--CG-GCUGCgagu -5'
23246 3' -61 NC_005259.1 + 60549 0.7 0.284094
Target:  5'- cCGCUCGuCgGCauGCCCggUGCCGACGgUCAg -3'
miRNA:   3'- -GUGAGU-GgCG--CGGG--ACGGCUGCgAGU- -5'
23246 3' -61 NC_005259.1 + 57516 0.74 0.15129
Target:  5'- gACUCACCGCaGCgCUUGCCGACGgcgauggcgucCUCGg -3'
miRNA:   3'- gUGAGUGGCG-CG-GGACGGCUGC-----------GAGU- -5'
23246 3' -61 NC_005259.1 + 55869 0.66 0.49384
Target:  5'- aACUCGCCgaGCGCCUcGCCccGAC-CUCGg -3'
miRNA:   3'- gUGAGUGG--CGCGGGaCGG--CUGcGAGU- -5'
23246 3' -61 NC_005259.1 + 53217 0.72 0.190986
Target:  5'- uCGCgUCGcCCGCGCCCUGCuUGAgGUUCGc -3'
miRNA:   3'- -GUG-AGU-GGCGCGGGACG-GCUgCGAGU- -5'
23246 3' -61 NC_005259.1 + 51768 0.68 0.383608
Target:  5'- gCGCUCGgCgaGCGCCUUGagguauUCGGCGCUCGg -3'
miRNA:   3'- -GUGAGUgG--CGCGGGAC------GGCUGCGAGU- -5'
23246 3' -61 NC_005259.1 + 48069 0.69 0.334955
Target:  5'- gCGC-CGCCGCGCCCUGagCGAUGgUg- -3'
miRNA:   3'- -GUGaGUGGCGCGGGACg-GCUGCgAgu -5'
23246 3' -61 NC_005259.1 + 48020 0.66 0.474402
Target:  5'- uGCUgCACCGCGCCCa--CGAUGUUg- -3'
miRNA:   3'- gUGA-GUGGCGCGGGacgGCUGCGAgu -5'
23246 3' -61 NC_005259.1 + 45514 0.67 0.409633
Target:  5'- gGC-CACCGCGCCgguguuggCcGCCGugGCUg- -3'
miRNA:   3'- gUGaGUGGCGCGG--------GaCGGCugCGAgu -5'
23246 3' -61 NC_005259.1 + 44845 0.7 0.284094
Target:  5'- ---aCACCGCGCCCgaGCaGuCGCUCAg -3'
miRNA:   3'- gugaGUGGCGCGGGa-CGgCuGCGAGU- -5'
23246 3' -61 NC_005259.1 + 44727 0.7 0.251021
Target:  5'- gCACccggCAgCGCGCCCUcgaccgcGCCGAgGCUCu -3'
miRNA:   3'- -GUGa---GUgGCGCGGGA-------CGGCUgCGAGu -5'
23246 3' -61 NC_005259.1 + 43281 0.69 0.319771
Target:  5'- gAC-CGCaGCGCCCgccGCCGACGCg-- -3'
miRNA:   3'- gUGaGUGgCGCGGGa--CGGCUGCGagu -5'
23246 3' -61 NC_005259.1 + 40283 1.08 0.000428
Target:  5'- aCACUCACCGCGCCCUGCCGACGCUCAa -3'
miRNA:   3'- -GUGAGUGGCGCGGGACGGCUGCGAGU- -5'
23246 3' -61 NC_005259.1 + 40143 0.69 0.30511
Target:  5'- aGCUCGCCGUcgguugucgguGCCCgccCCGGCaGCUCGa -3'
miRNA:   3'- gUGAGUGGCG-----------CGGGac-GGCUG-CGAGU- -5'
23246 3' -61 NC_005259.1 + 37161 0.8 0.058771
Target:  5'- uCAC-CGCCGCGCCC-GCCGACGC-CGc -3'
miRNA:   3'- -GUGaGUGGCGCGGGaCGGCUGCGaGU- -5'
23246 3' -61 NC_005259.1 + 36721 0.67 0.436729
Target:  5'- cCGCUCgacccGCCGCGCCC-GCCGggauACGUg-- -3'
miRNA:   3'- -GUGAG-----UGGCGCGGGaCGGC----UGCGagu -5'
23246 3' -61 NC_005259.1 + 35253 0.68 0.383608
Target:  5'- gCACUCGCguuguuCGCGCCC-GCCG-CGC-CGg -3'
miRNA:   3'- -GUGAGUG------GCGCGGGaCGGCuGCGaGU- -5'
23246 3' -61 NC_005259.1 + 33234 0.67 0.395616
Target:  5'- cCGgUCACCGCguacgugccagaucuGCCCgcagcGCCGAUGCUg- -3'
miRNA:   3'- -GUgAGUGGCG---------------CGGGa----CGGCUGCGAgu -5'
23246 3' -61 NC_005259.1 + 32413 0.66 0.464828
Target:  5'- aCACguagCACCGUGUCCU-CgGGCaGCUCGg -3'
miRNA:   3'- -GUGa---GUGGCGCGGGAcGgCUG-CGAGU- -5'
23246 3' -61 NC_005259.1 + 31565 0.68 0.342742
Target:  5'- cCGCUgCACCGCGCCUgaucGUCGccaucaGCUCAg -3'
miRNA:   3'- -GUGA-GUGGCGCGGGa---CGGCug----CGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.