miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23251 5' -60 NC_005259.1 + 40449 0.66 0.562524
Target:  5'- -gUGGCC-UGCCGgUG-UGGUUGACg -3'
miRNA:   3'- cgACCGGuGCGGCgGCaACCGACUGg -5'
23251 5' -60 NC_005259.1 + 53715 0.66 0.562524
Target:  5'- -gUGGucaCCGCGCCGCUGaUGGUgaUGucGCCg -3'
miRNA:   3'- cgACC---GGUGCGGCGGCaACCG--AC--UGG- -5'
23251 5' -60 NC_005259.1 + 8083 0.66 0.561494
Target:  5'- --cGuGCCGCGCUGgCGUgaccgugcgauccUGGCaGACCc -3'
miRNA:   3'- cgaC-CGGUGCGGCgGCA-------------ACCGaCUGG- -5'
23251 5' -60 NC_005259.1 + 39819 0.66 0.552248
Target:  5'- aUUGGCCAgCGCauugaGCgCGUUGGUcGGCg -3'
miRNA:   3'- cGACCGGU-GCGg----CG-GCAACCGaCUGg -5'
23251 5' -60 NC_005259.1 + 3906 0.66 0.552248
Target:  5'- ---cGCCAUGCUGCCGUaccugaaccccGGCgaGACCg -3'
miRNA:   3'- cgacCGGUGCGGCGGCAa----------CCGa-CUGG- -5'
23251 5' -60 NC_005259.1 + 1634 0.66 0.552248
Target:  5'- aCUGGCCAUGCC-CUacuacgGGUgGACCg -3'
miRNA:   3'- cGACCGGUGCGGcGGcaa---CCGaCUGG- -5'
23251 5' -60 NC_005259.1 + 39056 0.66 0.552248
Target:  5'- uGUUGGCgAUGuuGCCGagcuuGCUGGCg -3'
miRNA:   3'- -CGACCGgUGCggCGGCaac--CGACUGg -5'
23251 5' -60 NC_005259.1 + 41595 0.66 0.542029
Target:  5'- aGC-GGUCGCGCguCGgUGUUucggaucgcgaGGCUGACCa -3'
miRNA:   3'- -CGaCCGGUGCG--GCgGCAA-----------CCGACUGG- -5'
23251 5' -60 NC_005259.1 + 44783 0.66 0.542029
Target:  5'- gGC-GGUCgagaacagACGCuCGCCGgUGGCcUGGCCc -3'
miRNA:   3'- -CGaCCGG--------UGCG-GCGGCaACCG-ACUGG- -5'
23251 5' -60 NC_005259.1 + 26132 0.66 0.542029
Target:  5'- cGCcGGuCCgACGCCGCCGa-GGCcGAgCa -3'
miRNA:   3'- -CGaCC-GG-UGCGGCGGCaaCCGaCUgG- -5'
23251 5' -60 NC_005259.1 + 67746 0.66 0.542029
Target:  5'- gGC-GGCCACuagGCCGCCcc-GGCcaccGGCCa -3'
miRNA:   3'- -CGaCCGGUG---CGGCGGcaaCCGa---CUGG- -5'
23251 5' -60 NC_005259.1 + 25916 0.66 0.531874
Target:  5'- cCUGaGCCGcCGCCGCCGguccggUGaGCgcacGCCg -3'
miRNA:   3'- cGAC-CGGU-GCGGCGGCa-----AC-CGac--UGG- -5'
23251 5' -60 NC_005259.1 + 63576 0.66 0.521788
Target:  5'- aGCgGGauaUACGCCGCC--UGGCUGuuCu -3'
miRNA:   3'- -CGaCCg--GUGCGGCGGcaACCGACugG- -5'
23251 5' -60 NC_005259.1 + 44479 0.66 0.511777
Target:  5'- cCUGGCCGgGCCa--GUUGGUgacguaGACCg -3'
miRNA:   3'- cGACCGGUgCGGcggCAACCGa-----CUGG- -5'
23251 5' -60 NC_005259.1 + 61276 0.66 0.511777
Target:  5'- cGCUGGUCucgAUGCCGacgaaCGcgagcGGCUGAUCg -3'
miRNA:   3'- -CGACCGG---UGCGGCg----GCaa---CCGACUGG- -5'
23251 5' -60 NC_005259.1 + 51144 0.67 0.501847
Target:  5'- gGC-GGCCAUGa-GCgCGUucgGGUUGACCg -3'
miRNA:   3'- -CGaCCGGUGCggCG-GCAa--CCGACUGG- -5'
23251 5' -60 NC_005259.1 + 23649 0.67 0.501847
Target:  5'- --cGGCC-CGCCGaCGgcgacGGCUGgACCg -3'
miRNA:   3'- cgaCCGGuGCGGCgGCaa---CCGAC-UGG- -5'
23251 5' -60 NC_005259.1 + 46935 0.67 0.501847
Target:  5'- aGCUugcccGCCGCGCCGCCGaccGcGUUGAgCu -3'
miRNA:   3'- -CGAc----CGGUGCGGCGGCaa-C-CGACUgG- -5'
23251 5' -60 NC_005259.1 + 49635 0.67 0.501847
Target:  5'- gGCggcaGCCGCGUCGgCGaUGGC-GGCCu -3'
miRNA:   3'- -CGac--CGGUGCGGCgGCaACCGaCUGG- -5'
23251 5' -60 NC_005259.1 + 66837 0.67 0.482247
Target:  5'- uCUGGCuCAUGCCGCCcgcacgGGCcaccGAUCg -3'
miRNA:   3'- cGACCG-GUGCGGCGGcaa---CCGa---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.