miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23252 5' -66.6 NC_005259.1 + 66246 0.66 0.288596
Target:  5'- aGCCaucgacgcaGCGCgGCCCGCGccGGG-CgGCGGc -3'
miRNA:   3'- -CGGg--------CGCGgCGGGCGU--UCCgGgCGCU- -5'
23252 5' -66.6 NC_005259.1 + 46944 0.66 0.288596
Target:  5'- -nCCGCGCCGCcgaCCGCGuugagcuuguuGGCCaCGCc- -3'
miRNA:   3'- cgGGCGCGGCG---GGCGUu----------CCGG-GCGcu -5'
23252 5' -66.6 NC_005259.1 + 9665 0.66 0.288596
Target:  5'- uGCCCguuguuccacauGCGCUGCCgGuCGAGGUcgCCGCu- -3'
miRNA:   3'- -CGGG------------CGCGGCGGgC-GUUCCG--GGCGcu -5'
23252 5' -66.6 NC_005259.1 + 41439 0.66 0.287935
Target:  5'- cGCCauuuGCGCC-CCgCGUAGuagacccagaagcGGCCCGUGAc -3'
miRNA:   3'- -CGGg---CGCGGcGG-GCGUU-------------CCGGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 42623 0.66 0.287935
Target:  5'- aGCCCGaUGUCGCgCGUAGgcaccucGGCCC-CGAu -3'
miRNA:   3'- -CGGGC-GCGGCGgGCGUU-------CCGGGcGCU- -5'
23252 5' -66.6 NC_005259.1 + 35263 0.66 0.275606
Target:  5'- uGUUCGCGcCCGCCgCGCcGGGgUCGcCGAu -3'
miRNA:   3'- -CGGGCGC-GGCGG-GCGuUCCgGGC-GCU- -5'
23252 5' -66.6 NC_005259.1 + 25089 0.66 0.275606
Target:  5'- cGCCgcUGCGcCCGCCCcgaGCAAGGgcaaggucgacCCCGCcGAc -3'
miRNA:   3'- -CGG--GCGC-GGCGGG---CGUUCC-----------GGGCG-CU- -5'
23252 5' -66.6 NC_005259.1 + 56892 0.66 0.274969
Target:  5'- -aCCGCcaaucgcagcgugGCCGCCgcaGCAGGcguGCCCGCGu -3'
miRNA:   3'- cgGGCG-------------CGGCGGg--CGUUC---CGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 37269 0.66 0.273698
Target:  5'- gGCuuGagGCCGCCCgGCAGGacuugcauggcgguGCCCGCc- -3'
miRNA:   3'- -CGggCg-CGGCGGG-CGUUC--------------CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 54119 0.66 0.273698
Target:  5'- aGgCUGacauaGCCGCUCGUgaccagacgguuucGAGGCCCgGCGAu -3'
miRNA:   3'- -CgGGCg----CGGCGGGCG--------------UUCCGGG-CGCU- -5'
23252 5' -66.6 NC_005259.1 + 10133 0.66 0.269288
Target:  5'- aGCCCacGCGCgCGCCCGCc--GUUCGCa- -3'
miRNA:   3'- -CGGG--CGCG-GCGGGCGuucCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 37993 0.66 0.267416
Target:  5'- cGCCUGCG-UGCCCuuccaCAagaucaaguuugucAGGCCCGCGu -3'
miRNA:   3'- -CGGGCGCgGCGGGc----GU--------------UCCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 37006 0.66 0.267416
Target:  5'- uGCCCGCG-CGCCCGCcggggaacauGacaaugucgaucuuGGuGCCCGCc- -3'
miRNA:   3'- -CGGGCGCgGCGGGCG----------U--------------UC-CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 5441 0.66 0.264935
Target:  5'- nGCCCGCuGCCGCCgacagauCGCAugagcagcaccaauGGCCgGUGc -3'
miRNA:   3'- -CGGGCG-CGGCGG-------GCGUu-------------CCGGgCGCu -5'
23252 5' -66.6 NC_005259.1 + 3610 0.66 0.263088
Target:  5'- uCCUGCggGCCuaCCGCAAcGGCUCGCuGAg -3'
miRNA:   3'- cGGGCG--CGGcgGGCGUU-CCGGGCG-CU- -5'
23252 5' -66.6 NC_005259.1 + 16565 0.66 0.26125
Target:  5'- uCCCGCccaccgggcagaucGCCgaggacaucGCCCGCGAGGCCauCGGa -3'
miRNA:   3'- cGGGCG--------------CGG---------CGGGCGUUCCGGgcGCU- -5'
23252 5' -66.6 NC_005259.1 + 48473 0.66 0.26125
Target:  5'- cGCCggguCGCGUCgGCCUGUuccucgacgcgcuuGAGGgCCGCGAc -3'
miRNA:   3'- -CGG----GCGCGG-CGGGCG--------------UUCCgGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 20846 0.66 0.251035
Target:  5'- aGUCCGa--CGCCUGCAAGGUguucgaCGCGAu -3'
miRNA:   3'- -CGGGCgcgGCGGGCGUUCCGg-----GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 17754 0.66 0.251035
Target:  5'- aUCCGUgagGCCGCCgCGCGccGGGCCgaGCGc -3'
miRNA:   3'- cGGGCG---CGGCGG-GCGU--UCCGGg-CGCu -5'
23252 5' -66.6 NC_005259.1 + 8881 0.66 0.251035
Target:  5'- aCCCaCGCCGCCugagcgucaCGCucGGCCUGCu- -3'
miRNA:   3'- cGGGcGCGGCGG---------GCGuuCCGGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.